View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_114 (Length: 222)
Name: NF5418_low_114
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_114 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 2971689 - 2971501
Alignment:
| Q |
20 |
ttttattattctttgcacgatctacattatcgaataacaacatataaattaatttcgtatgcaaatttattttaaatttatacataaacaaatagcaagg |
119 |
Q |
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| T |
2971689 |
ttttattattctttgcacgatctacattatcgaataacaacatataaattaatttcgtatgcaaatttattttaaacttatacaaaaacaaatagcaagg |
2971590 |
T |
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| Q |
120 |
ttcgtagttatacttacatgaaagggtactttgtgcggattgaactttgcttctctcaataaatttgatgggcattacatataaatgat |
208 |
Q |
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| T |
2971589 |
ttcgtagttatacttacatgaaagggtactttgtgcggattgaactttgcttctctcaataaatttgatgggcattacatataaatgat |
2971501 |
T |
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