View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418_low_12 (Length: 524)

Name: NF5418_low_12
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418_low_12
NF5418_low_12
[»] chr5 (3 HSPs)
chr5 (288-524)||(31646363-31646599)
chr5 (10-57)||(36230340-36230387)
chr5 (10-44)||(31646322-31646356)
[»] chr3 (4 HSPs)
chr3 (125-285)||(34811102-34811260)
chr3 (125-192)||(3608333-3608400)
chr3 (226-282)||(3608399-3608453)
chr3 (10-57)||(33511361-33511407)
[»] chr7 (1 HSPs)
chr7 (10-57)||(40954083-40954130)
[»] chr4 (2 HSPs)
chr4 (21-57)||(46695768-46695804)
chr4 (10-57)||(22487745-22487792)
[»] chr6 (1 HSPs)
chr6 (14-48)||(12588030-12588064)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 288 - 524
Target Start/End: Original strand, 31646363 - 31646599
Alignment:
Q  288 tttcgagtaataaacattgaatgttgtctctttactataga--ttaagctgtgtatacaaaacattacacataagagttgtttcaatnnnnnnnnnnnnn 385  Q
    ||||||||||||||||||||||| |||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||| |                 
T  31646363 tttcgagtaataaacattgaatgctgtctctttactttagaaattaagctgtgtatacaaaacattacacataagagttgtttcattcaaaaaaaaaaaa 31646462  T
Q  386 nnnnnnnggagttgtgataaggttggtcataatgaaaaccttcattttgaacaggattggtgagttggtgatgaattagtataaaaaccttctatataat 485  Q
            ||||||||||||||||||| ||| ||||||||||||| |||||||| |||| ||||||||||||||||||| |||||| |||||||| ||||    
T  31646463 aaaaaa--gagttgtgataaggttggtgatagtgaaaaccttcatcttgaacagtattgatgagttggtgatgaattaggataaaacccttctatgtaat 31646560  T
Q  486 ttggattaatatttttatacaaattggatgaaatgaaac 524  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  31646561 ttggattaatatttttatacaaactggatgaaatgaaac 31646599  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 36230387 - 36230340
Alignment:
Q  10 attatactacttaaaaataaaaatttaaaatattttgtgtaggcacaa 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36230387 attatactacttaaaaataaaaatttaaaatattttgtgtaggcacaa 36230340  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 31646322 - 31646356
Alignment:
Q  10 attatactacttaaaaataaaaatttaaaatattt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  31646322 attatactacttaaaaataaaaatttaaaatattt 31646356  T

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Target: chr3 (Bit Score: 106; Significance: 8e-53; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 125 - 285
Target Start/End: Complemental strand, 34811260 - 34811102
Alignment:
Q  125 tgtttggtggagcggtacaattttcacgtcttggcaaaagcaaggcataaagtcacgtttgcacataagctacaatttatagtttctcaaaaccacaaca 224  Q
    |||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |    
T  34811260 tgtttgatggagcggtgcaatttccacgtcttggcaaaagcaaggcataaagtcacgtttgcacataagctacaatttgtagcttctcaaaaccacaata 34811161  T
Q  225 aaaaagtgctctaaatgtggagagagagaaggggtcaaacgcggaagcaaacacatactta 285  Q
    |||||| ||| ||||||||  |||| |||||||||||||| | ||||||||||||||||||    
T  34811160 aaaaagcgctttaaatgtg--gagaaagaaggggtcaaacactgaagcaaacacatactta 34811102  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 3608333 - 3608400
Alignment:
Q  125 tgtttggtggagcggtacaattttcacgtcttggcaaaagcaaggcataaagtcacgtttgcacataa 192  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  |||||||||||    
T  3608333 tgtttggtggagcggtacaatttccacatcttggcaaaagcaaggcataaagtcatatttgcacataa 3608400  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 3608399 - 3608453
Alignment:
Q  226 aaaagtgctctaaatgtggagagagagaaggggtcaaacgcggaagcaaacacatac 282  Q
    |||||||||||||| |||||||  ||||||||||||||||| |||| ||||||||||    
T  3608399 aaaagtgctctaaacgtggaga--gagaaggggtcaaacgctgaagtaaacacatac 3608453  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 33511407 - 33511361
Alignment:
Q  10 attatactacttaaaaataaaaatttaaaatattttgtgtaggcacaa 57  Q
    |||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  33511407 attatattacttaaaaataaaaatt-aaaatattttgtgtagggacaa 33511361  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 40954130 - 40954083
Alignment:
Q  10 attatactacttaaaaataaaaatttaaaatattttgtgtaggcacaa 57  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40954130 attattctacttaaaaataaaaatttaaaatattttgtgtaggcacaa 40954083  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 46695804 - 46695768
Alignment:
Q  21 taaaaataaaaatttaaaatattttgtgtaggcacaa 57  Q
    |||||||||||||||||||||||||||||||||||||    
T  46695804 taaaaataaaaatttaaaatattttgtgtaggcacaa 46695768  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 22487745 - 22487792
Alignment:
Q  10 attatactacttaaaaataaaaatttaaaatattttgtgtaggcacaa 57  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  22487745 attatactacttcaaaataaaaatgtaaaatattttgtgtgggcacaa 22487792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 12588030 - 12588064
Alignment:
Q  14 tactacttaaaaataaaaatttaaaatattttgtg 48  Q
    ||||| |||||||||||||||||||||||||||||    
T  12588030 tactaattaaaaataaaaatttaaaatattttgtg 12588064  T

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