View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_13 (Length: 519)
Name: NF5418_low_13
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 21 - 510
Target Start/End: Complemental strand, 16164120 - 16163631
Alignment:
| Q |
21 |
accgtaacgcgaacaccacgagctttttcaggcttattcatcacactttgtggcaacacacacctcacaagctcttgtgcaacagaaactgcttttgtac |
120 |
Q |
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| T |
16164120 |
accgtaacgcgaacaccacgagctttttcaggcttattcatcacactttgtggcaacacacacctcacaagctcttgcgcaacagaaactgcttttgtac |
16164021 |
T |
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| Q |
121 |
taagcaaaaaagcagcaccagcaccatctttatgaaaacttctcaacccaaaatgacatcgaaaattcgtcggatcggagatcttatgaggcctaagatt |
220 |
Q |
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| T |
16164020 |
taagcaaaaaagcagcaccagcaccgtctttatgaaaacttctcaacccaaaatgacatcgaaaattcgttggatcggagatcttatgaggcctaagatt |
16163921 |
T |
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| Q |
221 |
caaccctttcacaaaaacaacaacagtatcaccatctaaactagcttcatacgctactctatcccaagattgaggtgtttgattcttcaaaacaccaaaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16163920 |
caaccctttcacaaaaacaacaacagtatcaccatctaaactagcttcatacgctactctatcccaagattgaggtgtttgattcttcaaaacaccaaaa |
16163821 |
T |
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| Q |
321 |
ctccgatgacccacatcgccggaacgccgcaagtcaacaactttaaccccaccggagatagttgaattcgtttgaagtaatgggcaccttgctatagatc |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16163820 |
ctccgatgacccacatcgccggaacgccgcaagtcaacaactttaaccccaccggagatagttgaattcgtttgaagaaatgggcaccttgctatagatc |
16163721 |
T |
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| Q |
421 |
gaaattcatcgtaaaaatccattgataaaaccggttcaacatgaacatcaagaaccggtttagttgaaccgttgtttgctagagtataat |
510 |
Q |
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| T |
16163720 |
gaaattcatcgtaaaaatccattgataaaacaggttcaacatgaacatcaagaaccggtttagttgaaccgttgtttgctagagtataat |
16163631 |
T |
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