View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_14 (Length: 512)
Name: NF5418_low_14
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 5 - 512
Target Start/End: Complemental strand, 44575559 - 44575052
Alignment:
| Q |
5 |
cagagcacatttggtgtgcttcaagttatacaaactgataggtctattggatctcacttcaaggttccaccaggatggatgaacttgatatcaatgacat |
104 |
Q |
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| T |
44575559 |
cagagcacatttggtgtgcttcaagttatacagactgataggtctattggatctcacttcaaggttccaccaggatggatgaacttgatatcaatgacat |
44575460 |
T |
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| Q |
105 |
cactttcattttggatatgcatttatgagtgtatctaccttcctataatgaggataatcaataaaagggctacaagaagaatgagcatgggatgcagaat |
204 |
Q |
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| T |
44575459 |
cactttcattttggatatgcatttatgagtgtatctaccttcctataatgaggataatcaataaaagggctacaagaagaatgagcatgggatgcagaat |
44575360 |
T |
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| Q |
205 |
cagaattgggatattattatctatcctatgcatgttggtagctgcagttattgagaaaaagcgtcgtgactcggctttgaaacacaattcgtttatttcg |
304 |
Q |
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| T |
44575359 |
cagaattgggatattattatctatcctatgcatgttggtagctgcagttgttgagaaaaagcgtcgtgactcggctttgaaacacaattcgtttatttcg |
44575260 |
T |
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| Q |
305 |
cctgtgagctttggtttgctcttgccgcagtttgcgctgtccggtttaaatgaagcctttgctgctgttgctataatggaattctttacccttcaagtgc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575259 |
cctgtgagctttggtttgctcttgccgcagtttgcgctgtccggtttaaatgaagcctttgctgctgttgctataatggaattctttacccttcaagtgc |
44575160 |
T |
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| Q |
405 |
cggagtctatgaggactgtttctggtgccatcttctttttgagcctgtccattgcaaactacactggttccttaattgtcaacattgttcataaagcaac |
504 |
Q |
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| T |
44575159 |
cggagtctatgaggactgtttctggtgccatcttctttttgagcctgtccattgcaaactacactggttccttaattgtcaacattgttcataaagcaac |
44575060 |
T |
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| Q |
505 |
atcacata |
512 |
Q |
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| T |
44575059 |
atcacata |
44575052 |
T |
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