View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_16 (Length: 496)
Name: NF5418_low_16
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_16 |
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| [»] scaffold0287 (3 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 179 - 297
Target Start/End: Original strand, 16566 - 16683
Alignment:
| Q |
179 |
cctatagcgacctaattactcttcatttattttacttttgttagtacataatctacacgcctaaaccccctaagtctaatttccatcctccttttttatt |
278 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16566 |
cctatagtgacctaactactcttcatttattttacttttgttagtacataatctacacgcctaaa-cccctaagtctaatttccatcctccttttttatt |
16664 |
T |
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| Q |
279 |
gcacaatcatacaaaagac |
297 |
Q |
| |
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||||||||||||||||||| |
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| T |
16665 |
gcacaatcatacaaaagac |
16683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 358 - 486
Target Start/End: Original strand, 16745 - 16873
Alignment:
| Q |
358 |
attgaattcatgagtgaacccgaatacgattcttggatgaaataatatttgatagtcagactatatttacctcctaccgaacttcaggtaaccatagttc |
457 |
Q |
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|||| |||||||||||||||| | |||||||||||| ||||| |||||||||||||||||||||| |||||||||||| |||| ||| |||||| |||| |
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| T |
16745 |
attggattcatgagtgaacccaagtacgattcttgggtgaaacaatatttgatagtcagactatacttacctcctaccaaactccagataaccagagttt |
16844 |
T |
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| Q |
458 |
cctttcctgtaacacatcacatgcctttg |
486 |
Q |
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|||| || ||||||||||||||||||||| |
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| T |
16845 |
ccttccccgtaacacatcacatgcctttg |
16873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 16405 - 16509
Alignment:
| Q |
17 |
caaaaacaagcataccattcaaagtaaatcaaagaagcnnnnnnngcaaatctttgaggttggctacatcaatcaaaagatgcaataatgctctatcata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16405 |
caaaaacaagcataccattcaaagtaaatcaaagaagcaaaaaatt-aaatctttgaggttggctacatcgatcaaaagatgcaataatgctctatcata |
16503 |
T |
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| Q |
117 |
taccat |
122 |
Q |
| |
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|||||| |
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| T |
16504 |
taccat |
16509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 179 - 297
Target Start/End: Complemental strand, 3629519 - 3629402
Alignment:
| Q |
179 |
cctatagcgacctaattactcttcatttattttacttttgttagtacataatctacacgcctaaaccccctaagtctaatttccatcctccttttttatt |
278 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3629519 |
cctatagtgacctaactactcttcatttattttacttttgttagtacataatctacacgcctaaa-cccctaagtctaatttccatcctccttttttatt |
3629421 |
T |
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| Q |
279 |
gcacaatcatacaaaagac |
297 |
Q |
| |
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||||||||||||||||||| |
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| T |
3629420 |
gcacaatcatacaaaagac |
3629402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 358 - 486
Target Start/End: Complemental strand, 3629340 - 3629212
Alignment:
| Q |
358 |
attgaattcatgagtgaacccgaatacgattcttggatgaaataatatttgatagtcagactatatttacctcctaccgaacttcaggtaaccatagttc |
457 |
Q |
| |
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|||| |||||||||||||||| | |||||||||||| ||||| |||||||||||||||||||||| |||||||||||| |||| ||| |||||| |||| |
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| T |
3629340 |
attggattcatgagtgaacccaagtacgattcttgggtgaaacaatatttgatagtcagactatacttacctcctaccaaactccagataaccagagttt |
3629241 |
T |
|
| Q |
458 |
cctttcctgtaacacatcacatgcctttg |
486 |
Q |
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|||| || ||||||||||||||||||||| |
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| T |
3629240 |
ccttccccgtaacacatcacatgcctttg |
3629212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 3629680 - 3629576
Alignment:
| Q |
17 |
caaaaacaagcataccattcaaagtaaatcaaagaagcnnnnnnngcaaatctttgaggttggctacatcaatcaaaagatgcaataatgctctatcata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3629680 |
caaaaacaagcataccattcaaagtaaatcaaagaagcaaaaaatt-aaatctttgaggttggctacatcgatcaaaagatgcaataatgctctatcata |
3629582 |
T |
|
| Q |
117 |
taccat |
122 |
Q |
| |
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|||||| |
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|
| T |
3629581 |
taccat |
3629576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 11284237 - 11284189
Alignment:
| Q |
74 |
ggttggctacatcaatcaaaagatgcaataatgctctatcatataccat |
122 |
Q |
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|||||||||||| |||||| |||||||||||| || |||||||||||| |
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| T |
11284237 |
ggttggctacatggatcaaacgatgcaataatgttcaatcatataccat |
11284189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 12141793 - 12141745
Alignment:
| Q |
74 |
ggttggctacatcaatcaaaagatgcaataatgctctatcatataccat |
122 |
Q |
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||||||||||||| |||||| |||| |||||| ||||||||||||||| |
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| T |
12141793 |
ggttggctacatcgatcaaatcatgccataatgttctatcatataccat |
12141745 |
T |
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