View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418_low_17 (Length: 493)

Name: NF5418_low_17
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418_low_17
NF5418_low_17
[»] chr3 (15 HSPs)
chr3 (17-482)||(23464734-23465190)
chr3 (17-368)||(23406185-23406536)
chr3 (52-282)||(23480222-23480454)
chr3 (53-216)||(23441448-23441611)
chr3 (53-216)||(23473980-23474143)
chr3 (413-482)||(23406102-23406171)
chr3 (96-207)||(23353461-23353572)
chr3 (58-175)||(23448880-23448998)
chr3 (58-175)||(23500643-23500761)
chr3 (53-118)||(23455660-23455726)
chr3 (17-60)||(23449014-23449057)
chr3 (17-60)||(23435215-23435258)
chr3 (17-60)||(23500777-23500820)
chr3 (17-60)||(23353644-23353687)
chr3 (17-60)||(23455778-23455821)
[»] scaffold0201 (2 HSPs)
scaffold0201 (58-282)||(13040-13266)
scaffold0201 (17-60)||(13321-13364)
[»] scaffold0570 (2 HSPs)
scaffold0570 (58-259)||(10074-10275)
scaffold0570 (17-60)||(9976-10019)


Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 23465190 - 23464734
Alignment:
Q  17 ctaatttggttggttgggactctcaaaattataggtaagtaaaattaataaactattttctatcatttgaatgttttgtttctaatatagcacaattatt 116  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  23465190 ctaatttagttggttgggactctcgaaattataggtaagtaaaatcaataaactatttcctatcatttgaatgttttgtttctaatatagcacaattgtt 23465091  T
Q  117 tatttcataagtctttcatctccatatttgtagttggaaatgaacataaattttagaaatcgaagacgaaatataattttagaaagtaaaccaggccaaa 216  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23465090 tacttcataagtctttcatctccatatttgtagttggaaatgaacataaattttagaaattgaagacgaaatataattttagaaagtaaaccaggccaaa 23464991  T
Q  217 ttatttcgagaagtgaacaatgacattgatgtgcctggccatagttgatgaccttctgaaaactatcaaagtcatcatacactatctcacaannnnnnnn 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||            
T  23464990 ttatttcgagaagtgaacaatgacattgatgtgcctggccatagttgatgaccttctcaaaactatcaaagtcatcatacactatctcacaatttttttt 23464891  T
Q  317 acttcgatttggctgattatatttgtaccactaaaatattaatagtagtaacacatgcttcttatcatacgagtatcataaaacttttannnnnnnagaa 416  Q
    |||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||||         ||||||||||||||||||||       | ||    
T  23464890 acttcgatttggctgattctatttgtatcactaaaatcttaatagtagcaacacatgctt---------cgagtatcataaaacttttatttttttataa 23464800  T
Q  417 ttttctttaggatttcacttcctggaaaaaatagactttaattgcattgtgtgtttggtatttcat 482  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  23464799 ttttctttaggatttcacttcctagaaaaaatagactttaattgcactgtgtgtttggtatttcat 23464734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 23406536 - 23406185
Alignment:
Q  17 ctaatttggttggttgggactctcaaaattataggtaagtaaaattaataaactattttctatcatttgaatgttttgtttctaatatagcacaattatt 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23406536 ctaatttggttggttgggactctcaaaattataggcaagtaaaatcaataaactatttcctatcatttgaatgttttgtttctaatatagcacaattatt 23406437  T
Q  117 tatttcataagtctttcatctccatatttgtagttggaaatgaacataaattttagaaatcgaagacgaaatataattttagaaagtaaaccaggccaaa 216  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23406436 tacttcataagtctttcatctccatatttgtagttggaaatgaacataaattttagaaatcgaagacgaaatataattttagaaagtaaaccaggccaaa 23406337  T
Q  217 ttatttcgagaagtgaacaatgacattgatgtgcctggccatagttgatgaccttctgaaaactatcaaagtcatcatacactatctcacaannnnnnnn 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  23406336 ttatttcgagaagtgaacaatgacattgatgtgcctggccatagttgatgaccttctgaaaactatcaaagtcatcatacactatctcacaatttttttt 23406237  T
Q  317 acttcgatttggctgattatatttgtaccactaaaatattaatagtagtaac 368  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  23406236 acttccatttggctgtttatatttgtaccactaaaatcttaatagcagtaac 23406185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 52 - 282
Target Start/End: Complemental strand, 23480454 - 23480222
Alignment:
Q  52 taagtaaaattaataaactattttctatcatttgaatgttttgttt-ctaatatagcacaattatttatttcataagtctttcatctccatatttgtagt 150  Q
    |||||||||  ||||||||||||| ||| ||||  ||||||||||| |||||||||||||||||| || | ||| |||||||||||||| ||||  | ||    
T  23480454 taagtaaaaccaataaactattttatataattttcatgttttgttttctaatatagcacaattatatactacatgagtctttcatctccttattcatggt 23480355  T
Q  151 tggaaatgaacataaattttagaaatcgaagacgaaatataattttagaaagtaaaccaggccaaattatttcgagaagtgaacaatgacattgatgtgc 250  Q
    |||||||||||||| |||||| |||  |||  | |||  ||||||||||||||||| |||||| |||||||| ||||||||||||||||  || ||||||    
T  23480354 tggaaatgaacatagattttaaaaaatgaaagctaaaattaattttagaaagtaaa-caggccgaattatttggagaagtgaacaatgatgtttatgtgc 23480256  T
Q  251 ctggccatagttg--atgaccttctgaaaactat 282  Q
    |||||||||||||  |||||||||||||||||||    
T  23480255 ctggccatagttgatatgaccttctgaaaactat 23480222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 23441611 - 23441448
Alignment:
Q  53 aagtaaaattaataaactattttctatcatttgaatgttttgttt-ctaatatagcacaattatttatttcataagtctttcatctccatatttgtagtt 151  Q
    ||||||||| ||||||||||||  ||||||||  ||||||||||| |||||||||||||  |||||| | ||| |||||||||||||||||||  || ||    
T  23441611 aagtaaaataaataaactatttcatatcatttacatgttttgttttctaatatagcacagctatttactacatgagtctttcatctccatattcttaatt 23441512  T
Q  152 ggaaatgaacataaattttagaaatcgaagacgaaatataattttagaaagtaaaccaggccaaa 216  Q
    |||||||||||||||||||||||| | || || ||| |||||||| |||| |||| |||||||||    
T  23441511 ggaaatgaacataaattttagaaaacaaacactaaaaataatttttgaaaataaa-caggccaaa 23441448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 23474143 - 23473980
Alignment:
Q  53 aagtaaaattaataaactattttctatcatttgaatgttttgttt-ctaatatagcacaattatttatttcataagtctttcatctccatatttgtagtt 151  Q
    ||||||||| ||||||||||||  ||||||||  ||||||||||| |||||||||||||  |||||| | ||| |||||||||||||||| ||  || ||    
T  23474143 aagtaaaataaataaactatttcatatcatttacatgttttgttttctaatatagcacagctatttactacatgagtctttcatctccattttcttaatt 23474044  T
Q  152 ggaaatgaacataaattttagaaatcgaagacgaaatataattttagaaagtaaaccaggccaaa 216  Q
    |||||||||||||||||||||||| | || || ||| |||||||| |||| |||| |||||||||    
T  23474043 ggaaatgaacataaattttagaaaacaaacactaaaaataatttttgaaaataaa-caggccaaa 23473980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 413 - 482
Target Start/End: Complemental strand, 23406171 - 23406102
Alignment:
Q  413 agaattttctttaggatttcacttcctggaaaaaatagactttaattgcattgtgtgtttggtatttcat 482  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  23406171 agaattttctttaggatttcacttcctagaaaaaatagactttaattgcactgtgtgtttggtatttcat 23406102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 23353572 - 23353461
Alignment:
Q  96 ttctaatatagcacaattatttatttcataagtctttcatctccatatttgtagttggaaatgaacataaattttagaaatcgaagacgaaatataattt 195  Q
    |||||| | |||||||||||||| | || |||||||||||||||||||| ||   |||||||||||||| ||||||||||  |||  | ||| |||||||    
T  23353572 ttctaaaacagcacaattatttactacacaagtctttcatctccatattcgtgactggaaatgaacatagattttagaaaatgaaagcaaaaaataattt 23353473  T
Q  196 tagaaagtaaac 207  Q
    ||||||||||||    
T  23353472 tagaaagtaaac 23353461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 23448998 - 23448880
Alignment:
Q  58 aaattaataaactattttctatcatttgaatgttttgttt-ctaatatagcacaattatttatttcataagtctttcatctccatatttgtagttggaaa 156  Q
    |||| |||||||||| | |||| ||||| | ||||||||| |||||||||||||||| |||| | || |||| |||||| |||||||| ||  |||||||    
T  23448998 aaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcacaattttttactacacaagtttttcatttccatattcgtgattggaaa 23448899  T
Q  157 tgaacataaattttagaaa 175  Q
    ||||||||||||| |||||    
T  23448898 tgaacataaatttgagaaa 23448880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 23500761 - 23500643
Alignment:
Q  58 aaattaataaactattttctatcatttgaatgttttgttt-ctaatatagcacaattatttatttcataagtctttcatctccatatttgtagttggaaa 156  Q
    |||| |||||||||| | |||| ||||| | ||||||||| |||||||||||||||| ||||   || |||| ||||||||||||||| ||  |||||||    
T  23500761 aaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcacaattttttacaacacaagtttttcatctccatattcgtgattggaaa 23500662  T
Q  157 tgaacataaattttagaaa 175  Q
    ||||||||||||| |||||    
T  23500661 tgaacataaatttgagaaa 23500643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 23455726 - 23455660
Alignment:
Q  53 aagtaaaattaataaactattttctatcatttgaatgttttgt-ttctaatatagcacaattattta 118  Q
    ||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||| |||||||    
T  23455726 aagtaaaatcaataaactatttcctatcatttgcatgttttgtattctaatatagcacagttattta 23455660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 23449057 - 23449014
Alignment:
Q  17 ctaatttggttggttgggactctcaaaattataggtaagtaaaa 60  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  23449057 ctaatttggttggttgggactctcgaaattataggtaagtaaaa 23449014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 23435258 - 23435215
Alignment:
Q  17 ctaatttggttggttgggactctcaaaattataggtaagtaaaa 60  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||    
T  23435258 ctaatttagttggttgggactctcaaaattataggtaagaaaaa 23435215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 23500820 - 23500777
Alignment:
Q  17 ctaatttggttggttgggactctcaaaattataggtaagtaaaa 60  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  23500820 ctaatttggttggttgggactctcgaaattacaggtaagtaaaa 23500777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 23353687 - 23353644
Alignment:
Q  17 ctaatttggttggttgggactctcaaaattataggtaagtaaaa 60  Q
    ||||||| |||||||||||||||| ||||||||||| |||||||    
T  23353687 ctaatttagttggttgggactctcgaaattataggtgagtaaaa 23353644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 23455821 - 23455778
Alignment:
Q  17 ctaatttggttggttgggactctcaaaattataggtaagtaaaa 60  Q
    ||||||| ||||| |||||||||||||||||||||||| |||||    
T  23455821 ctaatttagttggatgggactctcaaaattataggtaaataaaa 23455778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 58 - 282
Target Start/End: Complemental strand, 13266 - 13040
Alignment:
Q  58 aaattaataaactattttctatcatttgaatgttttgtttct-aatatagcacaattatttatttcataagtctttcatctccatatttgtagttggaaa 156  Q
    |||| |||||||||| | |||| ||||| | ||||||||| | || |||||||||||||||| | ||| |||||||||||||| ||||  | ||||||||    
T  13266 aaatcaataaactatatcctatgatttgcaagttttgttttttaacatagcacaattatttactacatgagtctttcatctccttattcatggttggaaa 13167  T
Q  157 tgaacataaattttagaaatcgaagacgaaatataattttagaaagtaaaccaggccaaattatttcgagaagtgaacaatgacattgatgtgcctggcc 256  Q
    |||||||| |||||| |||  |||  | |||  |||||||||||||||||| ||||| |||||||| ||||||||||||||||  || ||||||||||||    
T  13166 tgaacatagattttaaaaaatgaaagctaaaattaattttagaaagtaaac-aggccgaattatttggagaagtgaacaatgatgtttatgtgcctggcc 13068  T
Q  257 atagttg--atgaccttctgaaaactat 282  Q
    |||||||  |||||||||||||||||||    
T  13067 atagttgatatgaccttctgaaaactat 13040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 13364 - 13321
Alignment:
Q  17 ctaatttggttggttgggactctcaaaattataggtaagtaaaa 60  Q
    ||||||| |||||||||||||||| |||||||||||||||||||    
T  13364 ctaatttagttggttgggactctcgaaattataggtaagtaaaa 13321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 58 - 259
Target Start/End: Original strand, 10074 - 10275
Alignment:
Q  58 aaattaataaactattttctatcatttgaatgttttgtttctaatatagcacaattatttatttcataagtcttt-catctccatatttgtagttggaaa 156  Q
    |||| ||||| |||| | |||| ||||| | ||||  |||||||||||||||||||  ||| | || |||| ||| |||||||||||||||  |||||||    
T  10074 aaatcaataagctatatcctatgatttgcaagtttgttttctaatatagcacaatttcttactacacaagttttttcatctccatatttgtgattggaaa 10173  T
Q  157 tgaacataaattttagaaatcgaagacgaaatataattttagaaagtaaaccaggccaaattatttcgagaagtgaacaatgacattgatgtgcctggcc 256  Q
    |||||||||||||||||||  |||  | ||| |||||||||||||||||| |||||| |||||||| ||||||| ||||||||  |||||||||||||||    
T  10174 tgaacataaattttagaaaatgaaagctaaaaataattttagaaagtaaa-caggcccaattatttggagaagtaaacaatgatgttgatgtgcctggcc 10272  T
Q  257 ata 259  Q
    |||    
T  10273 ata 10275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 9976 - 10019
Alignment:
Q  17 ctaatttggttggttgggactctcaaaattataggtaagtaaaa 60  Q
    ||||||| |||||||||||||||| |||||||||||||||||||    
T  9976 ctaatttagttggttgggactctcgaaattataggtaagtaaaa 10019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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