View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_18 (Length: 486)
Name: NF5418_low_18
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_18 |
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| [»] scaffold0189 (2 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 28 - 286
Target Start/End: Original strand, 8440 - 8697
Alignment:
| Q |
28 |
actaccagaagatcaaacctccacttcttttgaatcccacacaattaacaatccccctgaggcccctacaaatgatcgataagaaaaggcatgatttgag |
127 |
Q |
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| T |
8440 |
actaccagaagaccaaacctccacttcttttgaatcc-acacaattaacagtccccctgaggaccctacagatgatcgataagaaaaagcatgatttgag |
8538 |
T |
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| Q |
128 |
tctccccataacgaattacataaagaatcatcacacaccaaaagttttgtctcttgtaagcataaaatgaaaggactcttctctcccaccaacctcctga |
227 |
Q |
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| T |
8539 |
tctccctataacgaattacataaagaatcatcacacaccaaaagttttgtctcttgtaagcataaaatgaaagaactcttctctcccaccaacctcctga |
8638 |
T |
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| Q |
228 |
ctttcctccttttctctacaccttccaannnnnnnacgttccatgaaataagcttcata |
286 |
Q |
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| T |
8639 |
ctttccaccttttctctacacctcccaacccccgcacgttccatgaaataagcttcata |
8697 |
T |
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Target: scaffold0189; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 325 - 471
Target Start/End: Original strand, 8736 - 8882
Alignment:
| Q |
325 |
gactcctacgctccctcctcctccacatctctcccaaccaccacaggcgtcaacacgagtcctaactcaacatttttatgccgggataacacactaaact |
424 |
Q |
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| T |
8736 |
gactcctacactccctccacctcctcatctctcccaaccaccacaggcatcaacacgggtcctaaatcaacacttttatgccgggataacacactaaact |
8835 |
T |
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| Q |
425 |
tattgtgacaacttcccttaaacaaaacacctataactttaccaata |
471 |
Q |
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| T |
8836 |
tattgtgacaacttcctttaaacgaaacacctataactttaccaata |
8882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 17257393 - 17257485
Alignment:
| Q |
151 |
agaatcatcacacaccaaaagttttgtctcttgtaagcataaaatgaaaggactcttctctcccaccaacctcctgactttcctccttttctc |
243 |
Q |
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| T |
17257393 |
agaatcatcacacacaattaattttgtttcttgaatacaaagaatgaaaggacttttctcccccaccaacttcctcacttccctcctcttctc |
17257485 |
T |
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