View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_21 (Length: 474)
Name: NF5418_low_21
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 148 - 469
Target Start/End: Complemental strand, 14259887 - 14259566
Alignment:
| Q |
148 |
tggtgtatgttttgtattgagaagtttgaggaataattcatggtgtattgtagcaactgatacaggttactgattctggtgcttttgtatcaggtttttt |
247 |
Q |
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| T |
14259887 |
tggtgtatgttttgtattgagaagtttgaagaataattcatggtgtattgtagtaactgatacaggttactgattctggtgcttttgtatcaggtttttt |
14259788 |
T |
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| Q |
248 |
cttctagctgggcaagtttgctacaccttgtgttctggttttcttaaccattagtaaagatttacatattcaaaaaataatacttaattgataaaataac |
347 |
Q |
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| T |
14259787 |
cttctagctgggcaagtttggtacaccttgtgttctggttttcctaaccattagtaaagatttacatattcaaaaaataatacttaattgataaaataac |
14259688 |
T |
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| Q |
348 |
ttactactactatcttactacatttctttttccgatgctatttatactagcgttagtgtatgtttgattttgcactgatggattatgtaatttttacgtt |
447 |
Q |
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| T |
14259687 |
ttactactactatcttactacatttctttttccgatgctatttatactagcgttagtgtatgtttgattttgcggtgatggattatgtaatttttacgtt |
14259588 |
T |
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| Q |
448 |
taaatttattgttcatctcact |
469 |
Q |
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| T |
14259587 |
taaatttattgttcatctcact |
14259566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 14260793 - 14260724
Alignment:
| Q |
17 |
aagtatattactagaaagttacagattatcatagttaaataatcagaagagtaaaaagaataggataatggtt |
89 |
Q |
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| T |
14260793 |
aagtatattactagaaagttacagattat---agttaaacaatcagaagagtaaaaagaataggataatggtt |
14260724 |
T |
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