View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_22 (Length: 473)
Name: NF5418_low_22
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 454
Target Start/End: Complemental strand, 36717828 - 36717386
Alignment:
| Q |
11 |
cacagacctcacgaaaaaagaattataagaccgtgtaaaatgaggaaaaattatagggaagaattaatacatgccacatattaaacaaaacaagtggcaa |
110 |
Q |
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| T |
36717828 |
cacagacctcacgaaaaaagaattataagaccgtgtaaaatgaggaaaaattatagggaagaattaatacatgccacatgttaaacaaaacaagtggcaa |
36717729 |
T |
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| Q |
111 |
attaacttctcttgtcatacaaggtgtgaacttcttatccttccatgtaggcttatctgtttcatttaaatttggcttcattgccttatccaacttttga |
210 |
Q |
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| T |
36717728 |
attaacttctcttgtcatacaaggtgtgaacttcttatccttccatgtaggcttatctgtttcatttaaatttggcttcattgccttatccaacttttga |
36717629 |
T |
|
| Q |
211 |
aataaaataaaacatataggatgctta---aactgtaccataattcccttaaattctaggatgctttattccacaactaattaaaattagtccaacgtac |
307 |
Q |
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| T |
36717628 |
aataaaataaaacatata-taagctaatgcaattgtacc---attcccttaaattctaggatgctttattccacaactaattaaaattagtccaacgtac |
36717533 |
T |
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| Q |
308 |
ttcacaatttttatgtaggattttatattttccgtaaatcttacccttccaataagtttttatcacaaatagcatgcaaatgttacttaccactaatata |
407 |
Q |
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| T |
36717532 |
ttcacaatttttatgtaggattttatattttccgtaaatcttacccttccaataagtttttatcacaaatagcatgaaaatgttacttaccactaatata |
36717433 |
T |
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| Q |
408 |
gatatcttatccaaattaatgaattattaggagttcgacagtgatac |
454 |
Q |
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| T |
36717432 |
gatatcttatccaaattaatgaattattaggagttcaacagtgatac |
36717386 |
T |
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