View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_25 (Length: 463)
Name: NF5418_low_25
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Original strand, 56294661 - 56295103
Alignment:
| Q |
19 |
tgacttgcttgttttgtttgggaactttaagataacaaactcgatcatcgtcttgtgttgtgtcgtttcgtgagttgacaaagtttatatattcagacag |
118 |
Q |
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| T |
56294661 |
tgacatgcttgttttgtttgggaactttaagataacaaactcgatcatcgtcttgtgttgtgtcgtttcgtgagttgacaaagtttatatattcagacag |
56294760 |
T |
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| Q |
119 |
agga-tgtcaaatattttactgccattcttaacaaccacgtccacgcaccttcccttaatacaataactcgtttaagattttgacacttaaatcaagaga |
217 |
Q |
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| T |
56294761 |
aggactgtcaaatattttactgccattcttaacaaccacgtccacgcaccttcccttaatacaataactcgtttaagattttgacacttaaattaagaga |
56294860 |
T |
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| Q |
218 |
aatataattctcaaaaagtaagtaaattcacacattacgtacacattannnnnnnagtaagactaacaattaaacataatcataaatctattctatataa |
317 |
Q |
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| T |
56294861 |
aatataattctcaaaaagtaagtaaattcacacattacatacacatta--tttttagtaaaactaacaattaaacataatcataaatctattctatataa |
56294958 |
T |
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| Q |
318 |
ctagtaatttatt------nnnnnnnngaaagtaaattcttgtatgctttaccaaatttaacctatgactatgattgtgattctactttgattttatatg |
411 |
Q |
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| T |
56294959 |
ctattaatttattaaaaaaaaaaaaaaaaaagtaaattcttgtatgctttaccaaatttaacctatgactatgattgtgattctactttgattttatatg |
56295058 |
T |
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| Q |
412 |
aaaaatgttctgctcaaattatacctttttattcagttcatctca |
456 |
Q |
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| T |
56295059 |
aaaaatgttctgctcaaattatacctttttatttagttcatctca |
56295103 |
T |
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