View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_27 (Length: 457)
Name: NF5418_low_27
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 15 - 440
Target Start/End: Complemental strand, 2990175 - 2989739
Alignment:
| Q |
15 |
agtaaatgcagcacaacatcctcaacagaacttcataatgaactagtgattttaattttgtttgtgtaattatataattgaatggtagctgaagtacttc |
114 |
Q |
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| T |
2990175 |
agtaaatgcagcacaacatcctcaacagaacttcataatgaactagtgattttaattttgtttgtgtaattatataattgaatggtagctgaagtacttc |
2990076 |
T |
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| Q |
115 |
tctagcactagggacaagatctctgaattaaaaaattaaagcaaagttatggcacacgtatgatgtagg----gtatgagaaattgattatgaaatgtgg |
210 |
Q |
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| T |
2990075 |
tctagcactagggacaagatctctgaattaaaaaattaaagcaaagttatggcacacgtatgatgtagggtctgtatgagaaattgattatgaaatgtgg |
2989976 |
T |
|
| Q |
211 |
tagctgcaatcatcatctaaccnnnnnnnncctattaaaagacgttccctttcttttgcctttgcagatttttcactcaagaaagcaaaatttaattgcc |
310 |
Q |
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| T |
2989975 |
tagctgcaattatcatctaaccttttttttcctattaaaagacgttccctttcttttgcctttgcagatttttcactcaagaaagcaaaatttaattgcc |
2989876 |
T |
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| Q |
311 |
taatcaacggtaagatactaaaacttacttggaaaatg-------nnnnnnnnacaaggacttggaaaatgttcccttcaaagcatttgatgtgaattcg |
403 |
Q |
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| T |
2989875 |
caatcaacggtaagatactaaaaattacttggaaaatgttttgtttttttttgacaaggacttggaaaatgttcccttcaaagtatttgatgtgaattcg |
2989776 |
T |
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| Q |
404 |
gaaatcatatcataccaataaattacgttagatgtgt |
440 |
Q |
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| T |
2989775 |
gaaatcatatcataccaataaattacgttagatgtgt |
2989739 |
T |
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