View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_29 (Length: 454)
Name: NF5418_low_29
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Complemental strand, 25732345 - 25731923
Alignment:
| Q |
19 |
aggaagcaccgtcgagaagagcgatgactttagggtctggtgctatgaaaccacctggtggcatgttgagtttgaggacagtggaattgtatttttcgat |
118 |
Q |
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| T |
25732345 |
aggaagcaccgtcgagaagagcgatgacttttgggtctggagcgatgaaaccacctggtggcatgttgagtttgaggacagtggagttgtatttttcgat |
25732246 |
T |
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| Q |
119 |
tctggtttggaagtatttgtcacgtccttggttgtagaagtagtcgtgtctgtcatggaggggtccgatgatgggaagaccgtagcttcctgggattggt |
218 |
Q |
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| T |
25732245 |
tctggtttggaagtatttgtcacgtccttggttgtagaagtagtcatgtctgtcatggaggggtccgatgatgggaagaccgtagcttcctgggattggt |
25732146 |
T |
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| Q |
219 |
ttcaaggggaggttggtggaggaggtttctgatgaggaagccattgttggagtggtttgtgtttggtcaaaagatggttgaacttgcttgtaataactat |
318 |
Q |
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| T |
25732145 |
ttcaaggggaggttggttgaggaggtttctgatgaggaagccattgttggagtggtttgtgtttggtcaaaagatggctgaacttgcttgtaataactat |
25732046 |
T |
|
| Q |
319 |
gaggttgttttcaaaagtgagaagtgagacttcatttgatcggattttaaaggatttggatcgtgtcaaaatggaaacatgagttatctcaccattaaac |
418 |
Q |
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| T |
25732045 |
-aggttgttttcaaaagtgagaa-tgagacttcatttgatcggattttaaaggatttggattgtgtc-aaatagaaacatgagttatctcgccattaaac |
25731949 |
T |
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| Q |
419 |
atta-aatttattcggccccacctat |
443 |
Q |
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| T |
25731948 |
attataatttattcggccccacctat |
25731923 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 12490668 - 12490571
Alignment:
| Q |
71 |
acctggtggcatgttgagtttgaggacagtggaattgtatttttcgattctggtttggaagtatttgtcacgtccttggttgtagaagtagtcgtgtc |
168 |
Q |
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|||||||||||||||| | ||| || || || |||||||||| |||||| ||| |||| ||||||| | |||||||||||||||||||||||||| |
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| T |
12490668 |
acctggtggcatgttggttctgaagattgttgagttgtatttttggattcttgttgagaagaatttgtctcttccttggttgtagaagtagtcgtgtc |
12490571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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