View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418_low_30 (Length: 451)

Name: NF5418_low_30
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418_low_30
NF5418_low_30
[»] chr8 (27 HSPs)
chr8 (9-433)||(39847958-39848382)
chr8 (45-433)||(38632247-38632633)
chr8 (30-433)||(38453873-38454279)
chr8 (38-130)||(38453605-38453697)
chr8 (43-184)||(34544772-34544913)
chr8 (30-130)||(39848639-39848739)
chr8 (282-390)||(34534099-34534207)
chr8 (30-130)||(34533709-34533809)
chr8 (30-130)||(38632787-38632887)
chr8 (30-177)||(34533847-34533994)
chr8 (38-125)||(34549175-34549262)
chr8 (50-177)||(38633019-38633145)
chr8 (50-178)||(34539030-34539158)
chr8 (31-127)||(34916549-34916645)
chr8 (30-110)||(39848518-39848598)
chr8 (50-184)||(39848723-39848857)
chr8 (30-130)||(34916134-34916234)
chr8 (31-158)||(34916273-34916400)
chr8 (31-130)||(34916411-34916510)
chr8 (281-393)||(34544941-34545053)
chr8 (30-130)||(38632651-38632751)
chr8 (30-129)||(38632929-38633028)
chr8 (30-123)||(34533571-34533664)
chr8 (30-72)||(34544897-34544939)
chr8 (139-184)||(34916105-34916150)
chr8 (281-390)||(34916661-34916770)
chr8 (54-122)||(39848368-39848436)
[»] chr4 (3 HSPs)
chr4 (30-433)||(44474061-44474467)
chr4 (38-177)||(44474596-44474735)
chr4 (30-153)||(44474482-44474605)
[»] chr3 (3 HSPs)
chr3 (264-429)||(7046868-7047033)
chr3 (112-252)||(7046154-7046295)
chr3 (38-103)||(7045814-7045879)
[»] chr2 (6 HSPs)
chr2 (218-360)||(32716472-32716614)
chr2 (218-360)||(32716679-32716821)
chr2 (258-360)||(32714058-32714160)
chr2 (228-360)||(32717300-32717432)
chr2 (281-360)||(32716886-32716965)
chr2 (218-359)||(32717094-32717235)
[»] chr6 (5 HSPs)
chr6 (235-360)||(14904916-14905041)
chr6 (218-360)||(14905520-14905662)
chr6 (279-360)||(14905167-14905248)
chr6 (298-390)||(14904772-14904864)
chr6 (281-360)||(14905376-14905455)
[»] chr5 (3 HSPs)
chr5 (237-343)||(2998206-2998312)
chr5 (298-360)||(2997983-2998045)
chr5 (209-361)||(2997775-2997927)


Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 9 - 433
Target Start/End: Complemental strand, 39848382 - 39847958
Alignment:
Q  9 catcaaaaacatcactacaagtccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaacc 108  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||    
T  39848382 catcaaaaacatcactacaagtccaatttccagtgtagacgtcaccatttgcaaatctaaaaactccatatccatatacaaagtcatttgaccaacaacc 39848283  T
Q  109 atcaaaaacatcaccattagccaaagtctcaatccctcttccatcttttttatcatttttccaatttccaatgtagctacctccattcttataagtttgg 208  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39848282 attaaaaacatcaccattagccaaagtctcaatccctcttccatcttttttatcatttttccaatttccaacgtagctacctccattcttataagtttgg 39848183  T
Q  209 gtgccattgccatgacggcaattcccaaagaattcaccctcatacttgtctcctgatggctgtatgaacagtcctttccctgtcttatctccatcaaccc 308  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39848182 gtgccattgccatgacggcgattcccaaagaattcaccctcatacttgtctcctgatggctgtatgaacaatcctttccctgtcttatctccatcaaccc 39848083  T
Q  309 aatcacccacatatattgatccatctgaccatgtgcactttcctttgccatgagcaagtccatccttgatgttaccaatgtaaacaccctcatctgaata 408  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39848082 aatcacccacatatattgatccatctgaccatgtgtactttcttttgccatgagcaagtccatccttgatgttaccaatgtaaacaccctcatctgaata 39847983  T
Q  409 caacatctctttaaacctacagttt 433  Q
    |||||||||||||||||||||||||    
T  39847982 caacatctctttaaacctacagttt 39847958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 45 - 433
Target Start/End: Complemental strand, 38632633 - 38632247
Alignment:
Q  45 agacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagccaaagtctcaatccc 144  Q
    |||| ||||||||||||  |||| |||||||| ||||||||| ||   |||||||||||||| |||| ||||||||||||||||||||||| ||  ||||    
T  38632633 agacatccccatttgcagctctaaaaactccaaatccatgtagaagtccatttgaccaacaagcatccaaaacatcaccattagccaaagtttctgtccc 38632534  T
Q  145 tcttccatctttttt--atcatttttccaatttccaatgtagctacctccattcttataagtttgggtgccattgccatgacggcaattcccaaagaatt 242  Q
    | |||||||||||||  ||||||||||||||||||||||| || |||| ||| |||  ||||||||||| ||||||||||||| ||||||| ||||||||    
T  38632533 ttttccatcttttttttatcatttttccaatttccaatgt-gccaccttcatccttccaagtttgggtgtcattgccatgacgacaattcctaaagaatt 38632435  T
Q  243 caccctcatacttgtctcctgatggctgtatgaacagtcctttccctgtcttatctccatcaacccaatcacccacatatattgatccatctgaccatgt 342  Q
    ||||||||||||||||||||||||  | |||||||||||||       || | ||||| ||||||||||||||| ||||| ||||||||||||||||| |    
T  38632434 caccctcatacttgtctcctgatgaatatatgaacagtcct-------tcatctctccgtcaacccaatcaccctcatatgttgatccatctgaccattt 38632342  T
Q  343 gcactttcctttgccatgagcaagtccatccttgatgttaccaatgtaaacacc----ctcatctgaatacaacatctctttaaacctacagttt 433  Q
    |||||||||  ||||||||  |||| || |||||| |||||||||||| |||||    | | | |||| | ||||||||||||||||||||||||    
T  38632341 gcactttccgctgccatgacgaagttcacccttgaagttaccaatgtagacacccgcgcgcgtttgaagaaaacatctctttaaacctacagttt 38632247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 30 - 433
Target Start/End: Original strand, 38453873 - 38454279
Alignment:
Q  30 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagc 129  Q
    ||||||||||| |||  || ||||||||| || ||||| |||||||||||||||||||||    |||||||||||||||||||||||||||||||| ||     
T  38453873 tccaatttccagtgttaacatccccatttacagatctataaactccatatccatgtacaagtctatttgaccaacaaccatcaaaaacatcaccatcagg 38453972  T
Q  130 caaagtctcaatccctcttccatcttttttatcatttttccaatttccaatgtagctacctccattcttataagtttgggtgccattgccatgacggcaa 229  Q
    | || ||  | |||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||| |||  |||||||||||||||| ||||||||||||    
T  38453973 ccaactcatagtccctcttccatctcttttatcttttttccaatttccagtgtagatacctccatccttccaagtttgggtgccattaccatgacggcaa 38454072  T
Q  230 ttcccaaagaattcaccctcatacttgtctcctgatggctgtatgaaca---gtcctttccctgtcttatctccatcaacccaatcacccacatatattg 326  Q
    |  ||| |||| ||||||||||| ||   |||| |||| |||| ||| |   ||||||||| || | |||||||||||| |||||||||| |||||| ||    
T  38454073 tctccagagaactcaccctcataatttggtcctcatggatgtaagaataatcgtcctttccttgccatatctccatcaatccaatcaccctcatatactg 38454172  T
Q  327 atccatctgaccatgtgcactttcctttgccatgagcaagtccatccttgatgttaccaatgtaaacaccctcatctgaatacaacatctctttaaacct 426  Q
    |||||  |||| ||||| ||||||| |||||||||  |||| ||||||||| |||||||| ||| ||| || ||| |||||| || ||||  ||||||||    
T  38454173 atccacatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaacgtagacatccccatttgaatagaatatctgattaaacct 38454272  T
Q  427 acagttt 433  Q
    |||||||    
T  38454273 acagttt 38454279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 38453605 - 38453697
Alignment:
Q  38 ccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagcc 130  Q
    ||||||| ||| |||||||||||||||||| |||||||| ||||||||| ||   ||||||||||||||||||||||||||||||||||||||    
T  38453605 ccaatgtcgacatccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccaacaaccatcaaaaacatcaccattagcc 38453697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 43 - 184
Target Start/End: Original strand, 34544772 - 34544913
Alignment:
Q  43 gtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagccaaagtctcaatc 142  Q
    |||||| | |||||||| ||||||| |||||||||||||||||  |    ||||||||||||| ||||  ||||||||||||||| || || ||  ||||    
T  34544772 gtagacattcccatttgaaaatctataaactccatatccatgtctatgtccatttgaccaacatccattgaaaacatcaccattaacccaattcataatc 34544871  T
Q  143 cctcttccatcttttttatcatttttccaatttccaatgtag 184  Q
    |||||||||||  ||||||||||||||||||| |||||||||    
T  34544872 cctcttccatccattttatcatttttccaattaccaatgtag 34544913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 39848739 - 39848639
Alignment:
Q  30 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagc 129  Q
    |||||||||| |||||||| |||||||||||||||||| |||||||| ||||||||  ||   ||||||||  |||||||||||||||||||||||||||    
T  39848739 tccaatttccgatgtagacatccccatttgcaaatctataaactccaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagc 39848640  T
Q  130 c 130  Q
    |    
T  39848639 c 39848639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 390
Target Start/End: Original strand, 34534099 - 34534207
Alignment:
Q  282 ctttccctgtcttatctccatcaacccaatcacccacatatattgatccatctgaccatgtgcactttcctttgccatgagcaagtccatccttgatgtt 381  Q
    ||||||||||| | | ||||||||||||||| ||| ||||||||| |||||||||||||||| |||| || |||||||||  |||| || |||||| |||    
T  34534099 ctttccctgtcatttgtccatcaacccaatcgccctcatatattgttccatctgaccatgtgtacttcccgttgccatgacaaagttcacccttgaagtt 34534198  T
Q  382 accaatgta 390  Q
    |||||||||    
T  34534199 accaatgta 34534207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 34533709 - 34533809
Alignment:
Q  30 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagc 129  Q
    |||||| |||| ||| ||| |||||||||| ||||||| |||||||||||||||||  ||   ||||||||||||||||||| |||||| ||||||||||    
T  34533709 tccaatgtccactgtggacatccccatttgtaaatctacaaactccatatccatgtctaagtccatttgaccaacaaccatcgaaaacaacaccattagc 34533808  T
Q  130 c 130  Q
    |    
T  34533809 c 34533809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 38632887 - 38632787
Alignment:
Q  30 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagc 129  Q
    ||||||||||| ||||||| |||||||||||| ||||| |||||||| ||||||||| ||   ||| ||||||||||||||| || ||||||||| ||||    
T  38632887 tccaatttccagtgtagacatccccatttgcagatctataaactccaaatccatgtataagtccatctgaccaacaaccatcgaagacatcaccagtagc 38632788  T
Q  130 c 130  Q
    |    
T  38632787 c 38632787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 34533847 - 34533994
Alignment:
Q  30 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagc 129  Q
    |||||| |||| ||| ||| |||||||||||| ||||| ||||||||||||||| |  ||    |||||||||||||||||||||||||||||||| | |    
T  34533847 tccaatgtccagtgtggacatccccatttgcatatctataaactccatatccatctttaagtctatttgaccaacaaccatcaaaaacatcaccatcaac 34533946  T
Q  130 caaagtctcaatccctcttccatcttttttatcatttttccaatttcc 177  Q
    | || ||  ||||||| | |||||| ||||  |||||| |||||||||    
T  34533947 ccaattcataatccctttcccatctattttcccattttcccaatttcc 34533994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 34549175 - 34549262
Alignment:
Q  38 ccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccat 125  Q
    ||||||||||| | |||||||| ||||||| |||||||||||||||||  ||   |||| ||||||||||||||||||||||||||||    
T  34549175 ccaatgtagacattcccatttgaaaatctataaactccatatccatgtgtaagtccattagaccaacaaccatcaaaaacatcaccat 34549262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 38633145 - 38633019
Alignment:
Q  50 tccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagccaaagtctcaatccctcttc 149  Q
    |||||||| ||| ||||| |||||||| ||||||||| ||   ||||||||||||||||||| || ||||||||| ||||| |||||  ||||||| |||    
T  38633145 tccccattagcatatctataaactccagatccatgtataagcccatttgaccaacaaccatcgaagacatcaccagtagcccaagtcataatccctattc 38633046  T
Q  150 catcttttttatcatttttccaatttcc 177  Q
    ||||  |||| || ||||||||||||||    
T  38633045 catccattttgtc-tttttccaatttcc 38633019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 178
Target Start/End: Original strand, 34539030 - 34539158
Alignment:
Q  50 tccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagccaaagtctcaatccctcttc 149  Q
    |||||||||||||||||| |||||||| | ||||||  ||   |||||||||||||||||| ||||||||| ||||||||| || ||  ||||||  |||    
T  34539030 tccccatttgcaaatctataaactccagaaccatgtctaagtccatttgaccaacaaccattaaaaacatcgccattagcccaattcataatcccatttc 34539129  T
Q  150 catcttttttatcatttttccaatttcca 178  Q
    ||||| ||||    |||||||||||||||    
T  34539130 catctcttttcctttttttccaatttcca 34539158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 34916549 - 34916645
Alignment:
Q  31 ccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccatta 127  Q
    |||||||||| |||||||||  ||||||||| ||||| |||||||||||||||||  ||   ||||||||||||||||||| |||| | ||||||||    
T  34916549 ccaatttccagtgtagacgtttccatttgcagatctataaactccatatccatgtgaaagtccatttgaccaacaaccatcgaaaatagcaccatta 34916645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 39848598 - 39848518
Alignment:
Q  30 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccat 110  Q
    |||||||||||||| |||| |||||||||||  ||||| ||||||||||||||||| |||   ||||||||||||||||||    
T  39848598 tccaatttccaatggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 39848518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 39848857 - 39848723
Alignment:
Q  50 tccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagccaaagtctcaatccctcttc 149  Q
    ||||| || ||| ||||| |||||||||||||||||| ||   ||||||||||||||||||| || |||||||||  | || || ||  ||||||| |||    
T  39848857 tccccgttagcatatctataaactccatatccatgtataagtccatttgaccaacaaccatcgaagacatcaccaacaacccaactcataatccctgttc 39848758  T
Q  150 catcttttttatcatttttccaatttccaatgtag 184  Q
    ||||  |||| || |||||||||||||| ||||||    
T  39848757 catccattttgtcttttttccaatttccgatgtag 39848723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 34916134 - 34916234
Alignment:
Q  30 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagc 129  Q
    ||||||||||| ||||||| || ||||||||||||||| |||||||||| ||||||       ||||||||||| ||||||| ||||||||||| |||||    
T  34916134 tccaatttccagtgtagacatctccatttgcaaatctataaactccatagccatgtttctgtccatttgaccaataaccatcgaaaacatcaccgttagc 34916233  T
Q  130 c 130  Q
    |    
T  34916234 c 34916234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 34916273 - 34916400
Alignment:
Q  31 ccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagcc 130  Q
    |||||||||| |||||||||  ||||| ||| ||||| |||||||||||||||||  ||   ||||||||||| ||||||| |||| | |||||||| ||    
T  34916273 ccaatttccagtgtagacgtttccattagcagatctataaactccatatccatgtgaaagtccatttgaccaataaccatcgaaaatagcaccattaccc 34916372  T
Q  131 aaagtctcaatccctcttccatcttttt 158  Q
     || ||  ||||||| ||||||| ||||    
T  34916373 caattcataatcccttttccatcctttt 34916400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 34916411 - 34916510
Alignment:
Q  31 ccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagcc 130  Q
    ||||||||||   ||||| |||||||||||||||||| |||||||||||||||||  |    ||||||||||| ||||||| ||||||||| | ||||||    
T  34916411 ccaatttccagcatagacatccccatttgcaaatctataaactccatatccatgtttatgtccatttgaccaataaccatcgaaaacatcatcgttagcc 34916510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 393
Target Start/End: Original strand, 34544941 - 34545053
Alignment:
Q  281 cctttccctgtcttatctccatcaacccaatcacccacatatattgatccatctgaccatgtgcactttcctttgccatgagcaagtccatccttgatgt 380  Q
    |||||||||||| | | |||||||||||| |||||| | ||||||| ||||| || ||||||| |||||||  ||||||||| || | || || |||  |    
T  34544941 cctttccctgtcatttttccatcaacccagtcaccctcgtatattgttccatttgtccatgtgtactttccgatgccatgaggaatttcacccctgaatt 34545040  T
Q  381 taccaatgtaaac 393  Q
    |||||||||||||    
T  34545041 taccaatgtaaac 34545053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 38632751 - 38632651
Alignment:
Q  30 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagc 129  Q
    |||||||||| |||||||| | ||||| |||| ||||| |||||||| ||||||||  |||  |||||||   ||||||||||||| ||||||||| |||    
T  38632751 tccaatttcccatgtagacatgcccatctgcatatctataaactccaaatccatgtctaaatccatttgatagacaaccatcaaaagcatcaccatcagc 38632652  T
Q  130 c 130  Q
    |    
T  38632651 c 38632651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 38633028 - 38632929
Alignment:
Q  30 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagc 129  Q
    |||||||||| | ||| || ||||||||||||||| || |||||||| |||||| |  ||   |||||||| || ||||||||||||||||||| |||||    
T  38633028 tccaatttcctacgtaaacatccccatttgcaaatttataaactccaaatccatatctaagtccatttgacaaataaccatcaaaaacatcaccgttagc 38632929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 34533571 - 34533664
Alignment:
Q  30 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcacc 123  Q
    |||| |||||||| ||||| |||||||| ||| || || |||||||| ||||||||  ||   ||||| ||||||||||||| |||||||||||    
T  34533571 tccattttccaatatagacatccccattagcatatgtataaactccagatccatgtttaagtccattttaccaacaaccatcgaaaacatcacc 34533664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 34544897 - 34544939
Alignment:
Q  30 tccaatttccaatgtagacgtccccatttgcaaatctagaaac 72  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||    
T  34544897 tccaattaccaatgtagacatccccatttgcaaatctataaac 34544939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 34916105 - 34916150
Alignment:
Q  139 aatccctcttccatcttttttatcatttttccaatttccaatgtag 184  Q
    |||||||||||||||  |||||| |||||||||||||||| |||||    
T  34916105 aatccctcttccatccattttattatttttccaatttccagtgtag 34916150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 390
Target Start/End: Original strand, 34916661 - 34916770
Alignment:
Q  281 cctttccctgtcttatctccatcaacccaatcacccacatatattgatccatctgaccatgtgcactttcctttgccatgagcaagtccatccttgatgt 380  Q
    ||||||||||||   | |||||||||||| |||||| | ||||||| ||||| || ||||||| |||||||  |||||||   |||| || ||||||  |    
T  34916661 cctttccctgtcacttttccatcaacccagtcaccctcgtatattgttccatttgtccatgtgtactttcccatgccatggagaagttcacccttgaatt 34916760  T
Q  381 taccaatgta 390  Q
    ||||||||||    
T  34916761 taccaatgta 34916770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 39848436 - 39848368
Alignment:
Q  54 catttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcac 122  Q
    |||||||| ||||| |||||||| ||||||||| ||   || |||| | ||||||||||||||||||||    
T  39848436 catttgcatatctataaactccaaatccatgtataagcgcaattgatcgacaaccatcaaaaacatcac 39848368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 30 - 433
Target Start/End: Complemental strand, 44474467 - 44474061
Alignment:
Q  30 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagc 129  Q
    |||||||||||  |||||| ||||||| |  | || || |||||||| ||||||||||||   ||||||||||| |||||  ||||||||| ||| ||||    
T  44474467 tccaatttccagcgtagacatccccatctagagatgtaaaaactccaaatccatgtacaaggccatttgaccaagaaccaataaaaacatcgccaatagc 44474368  T
Q  130 caaagtctcaatccctcttccatcttttttatcatttttccaatttccaatgtagctacctccattcttataagtttgggtgccattgccatgacggcaa 229  Q
    | ||||   ||||||||||||||||  | |||| ||||||||||||||||||||| ||  ||||| |||  ||||| |||||||||| ||||||||| ||    
T  44474367 ccaagtgaaaatccctcttccatctggtgtatcttttttccaatttccaatgtagatagttccatccttcaaagttagggtgccattaccatgacggaaa 44474268  T
Q  230 ttcccaaagaattcaccctcatacttgtctcctgatggctgtatgaaca---gtcctttccctgtcttatctccatcaacccaatcacccacatatattg 326  Q
    |||||| |||| || |||||||||||   | ||||||||||||  ||||   |||||||||||| |   | |||||||||  |||||||| |||||||||    
T  44474267 ttcccagagaagtcgccctcatactttgatgctgatggctgtaccaacagtcgtcctttccctgccacctttccatcaacaaaatcaccctcatatattg 44474168  T
Q  327 atccatctgaccatgtgcactttcctttgccatgagcaagtccatccttgatgttaccaatgtaaacaccctcatctgaatacaacatctctttaaacct 426  Q
    ||||||||||||||||| ||||||| ||||||| || |||||||||||||| | |||||| ||| ||| || |   |||||  ||| |||||| ||||||    
T  44474167 atccatctgaccatgtgtactttccgttgccatcaggaagtccatccttgaagataccaacgtagacatcccctcttgaattgaacgtctcttcaaacct 44474068  T
Q  427 acagttt 433  Q
    |||||||    
T  44474067 acagttt 44474061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 38 - 177
Target Start/End: Complemental strand, 44474735 - 44474596
Alignment:
Q  38 ccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagccaaagtct 137  Q
    ||||||| ||| ||||||||||||||| || |||||||| ||||||||| ||   |||||||||| ||||| ||||||||||||||||||| | || ||     
T  44474735 ccaatgtcgacatccccatttgcaaatttaaaaactccagatccatgtataagtccatttgaccagcaaccttcaaaaacatcaccattagtccaactca 44474636  T
Q  138 caatccctcttccatcttttttatcatttttccaatttcc 177  Q
       |||||||||||||  |||| |||||||||||||||||    
T  44474635 tggtccctcttccatccattttgtcatttttccaatttcc 44474596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 44474605 - 44474482
Alignment:
Q  30 tccaatttccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaacaaccatcaaaaacatcaccattagc 129  Q
    |||||||||| || ||||| ||||||||| ||||| || |||||||| ||||||||  ||   ||||||||  |||||||| ||||  |||| |||||||    
T  44474605 tccaatttccgatatagacatccccatttacaaatgtataaactccaaatccatgtctaagcccatttgacagacaaccattaaaatgatcatcattagc 44474506  T
Q  130 caaagtctcaatccctcttccatc 153  Q
    | || ||  | |||||||||||||    
T  44474505 ccaattcaaattccctcttccatc 44474482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 429
Target Start/End: Original strand, 7046868 - 7047033
Alignment:
Q  264 atggctgtatgaacagtcctttccctgtcttatctccatcaacccaatcacccacatatattgatccatctgaccatgtgcactttcctttgccatgagc 363  Q
    ||||||||||||||  ||||||||||||| | || ||||||| |||||| ||| |||||||||||||||||||||||||| | ||||| |||||||||      
T  7046868 atggctgtatgaaccatcctttccctgtcatctccccatcaatccaatctccctcatatattgatccatctgaccatgtgtagtttccgttgccatgatg 7046967  T
Q  364 aagtccatccttgatgttaccaatgtaaacaccctcatctgaatacaacatctctttaaacctaca 429  Q
    ||||    |||| | |||| ||||||| |||| | ||| |||||| | ||||||||||||||||||    
T  7046968 aagttgccccttaaagttatcaatgtagacactcccatttgaatagatcatctctttaaacctaca 7047033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 252
Target Start/End: Original strand, 7046154 - 7046295
Alignment:
Q  112 aaaaacatcaccattagccaaagtctcaatccctcttccatcttttttatcatttttccaatttccaatgtagctacctccattcttataagtttgggtg 211  Q
    ||||| ||||||||||||| || || |||||||| |||||||  ||||||| |||||||||||||||| ||||  |  |||||  ||  |||| ||||||    
T  7046154 aaaaaaatcaccattagcccaactcacaatcccttttccatccattttatcttttttccaatttccaacgtagtcatttccatctttccaagtctgggtg 7046253  T
Q  212 ccattgccatgacgg-caattcccaaagaattcaccctcata 252  Q
    || || |||||||||  |||||| | ||||||||||||||||    
T  7046254 cccttaccatgacggtaaattcctagagaattcaccctcata 7046295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 7045814 - 7045879
Alignment:
Q  38 ccaatgtagacgtccccatttgcaaatctagaaactccatatccatgtacaaaatcatttgaccaa 103  Q
    ||||||| ||| || |||||||||||| || |||||||||||||||||| ||   |||||||||||    
T  7045814 ccaatgttgacatctccatttgcaaatgtaaaaactccatatccatgtataagtccatttgaccaa 7045879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 360
Target Start/End: Complemental strand, 32716614 - 32716472
Alignment:
Q  218 ccatgacggcaattcccaaagaattcaccctcata-cttgtctcctgatggctgtatgaacagtcctttccctgtcttatctccatcaacccaatcaccc 316  Q
    ||||||||| |||||| |||||||| ||||||| | |||| |||||||||| | ||||| | | |||||||||||| | | |||||||||||||||||||    
T  32716614 ccatgacgggaattcctaaagaattgaccctcaaaacttg-ctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccc 32716516  T
Q  317 acatatattgatccatctgaccatgtgcactttcctttgccatg 360  Q
     ||||||||| ||||| |||||||||| ||||||| ||||||||    
T  32716515 tcatatattgttccatttgaccatgtgtactttcccttgccatg 32716472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 360
Target Start/End: Complemental strand, 32716821 - 32716679
Alignment:
Q  218 ccatgacggcaattcccaaagaattcaccctcata-cttgtctcctgatggctgtatgaacagtcctttccctgtcttatctccatcaacccaatcaccc 316  Q
    ||||||||| |||||| |||||||| ||||||| | |||| |||||||||| | ||||| | | |||||||||||| | | |||||||||||||||||||    
T  32716821 ccatgacgggaattcctaaagaattgaccctcaaaacttg-ctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccc 32716723  T
Q  317 acatatattgatccatctgaccatgtgcactttcctttgccatg 360  Q
     ||||||||| ||||| | |||| ||| ||||||| ||||||||    
T  32716722 tcatatattgttccatttaaccacgtgtactttcccttgccatg 32716679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 258 - 360
Target Start/End: Complemental strand, 32714160 - 32714058
Alignment:
Q  258 ctcctgatggctgtatgaacagtcctttccctgtcttatctccatcaacccaatcacccacatatattgatccatctgaccatgtgcactttcctttgcc 357  Q
    |||||||||| | ||||| | | |||||||||||| | | ||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||| |||||    
T  32714160 ctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttgaccatgtgtactttcccttgcc 32714061  T
Q  358 atg 360  Q
    |||    
T  32714060 atg 32714058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 360
Target Start/End: Complemental strand, 32717432 - 32717300
Alignment:
Q  228 aattcccaaagaattcaccctcata-cttgtctcctgatggctgtatgaacagtcctttccctgtcttatctccatcaacccaatcacccacatatattg 326  Q
    |||||| | |||||||||||||| | |||| |||||||||| | ||| | | |||||||||||||| |   ||||||||||||||||||| | |||||||    
T  32717432 aattcctagagaattcaccctcaaaacttg-ctcctgatggatatattatccgtcctttccctgtccttcttccatcaacccaatcaccctcgtatattg 32717334  T
Q  327 atccatctgaccatgtgcactttcctttgccatg 360  Q
     ||||||| |||||||| ||||||||||||||||    
T  32717333 ttccatctaaccatgtgtactttcctttgccatg 32717300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 360
Target Start/End: Complemental strand, 32716965 - 32716886
Alignment:
Q  281 cctttccctgtcttatctccatcaacccaatcacccacatatattgatccatctgaccatgtgcactttcctttgccatg 360  Q
    |||||||||||| |   ||||||||||||||||||  | ||||||| ||||| |||||||||| ||||||||||||||||    
T  32716965 cctttccctgtccttcttccatcaacccaatcaccatcgtatattgttccatgtgaccatgtgtactttcctttgccatg 32716886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 359
Target Start/End: Complemental strand, 32717235 - 32717094
Alignment:
Q  218 ccatgacggcaattcccaaagaattcaccctcatacttgtctcctgatggctgtatgaacagtcctttccctgtcttatctccatcaacccaatcaccca 317  Q
    ||||||||| |||||||  |||||||||||||| |  |   ||||||||| | ||||| | | |||||||| ||| |   |||||||||||||||||||     
T  32717235 ccatgacgggaattcccggagaattcaccctcaaaagttgatcctgatggatatatgatctgacctttcccagtcattcttccatcaacccaatcaccct 32717136  T
Q  318 catatattgatccatctgaccatgtgcactttcctttgccat 359  Q
    | ||||||  |||||||| ||||||| ||||||| |||||||    
T  32717135 cgtatatttctccatctggccatgtgtactttcccttgccat 32717094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 360
Target Start/End: Original strand, 14904916 - 14905041
Alignment:
Q  235 aaagaattcaccctcatacttgtctcctgatggctgtatgaacagtcctttccctgtcttatctccatcaacccaatcacccacatatattgatccatct 334  Q
    |||||||||||||||| |  | |||||||||||   ||| | | | |||||||||||||| | |||||||||||| |||||| ||||||||  |||| ||    
T  14904916 aaagaattcaccctcaaaactttctcctgatggaaatatcatccgccctttccctgtcttttttccatcaacccagtcaccctcatatatttgtccacct 14905015  T
Q  335 gaccatgtgcactttcctttgccatg 360  Q
    ||||||||| ||||||| ||||||||    
T  14905016 gaccatgtgtactttcccttgccatg 14905041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 218 - 360
Target Start/End: Original strand, 14905520 - 14905662
Alignment:
Q  218 ccatgacggcaattcccaaagaattcaccctcata-cttgtctcctgatggctgtatgaacagtcctttccctgtcttatctccatcaacccaatcaccc 316  Q
    ||||||||| |||||| |||||||||||||||| | |||| |||||||||| | ||| | | | |||||||| ||| | ||||| |||||||| ||||||    
T  14905520 ccatgacgggaattcctaaagaattcaccctcaaaacttg-ctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccc 14905618  T
Q  317 acatatattgatccatctgaccatgtgcactttcctttgccatg 360  Q
     |||||||   ||||||||||||| || || |||||||||||||    
T  14905619 tcatatatctgtccatctgaccatctgtacattcctttgccatg 14905662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 360
Target Start/End: Original strand, 14905167 - 14905248
Alignment:
Q  279 gtcctttccctgtcttatctccatcaacccaatcacccacatatattgatccatctgaccatgtgcactttcctttgccatg 360  Q
    |||||||||||||| |   ||||| ||||||||||||| ||||||||  ||| |||||||||||||||||||| ||||||||    
T  14905167 gtcctttccctgtcctgcttccataaacccaatcaccctcatatatttctccctctgaccatgtgcactttcccttgccatg 14905248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 14904772 - 14904864
Alignment:
Q  298 tccatcaacccaatcacccacatatattgatccatctgaccatgtgcactttcctttgccatgagcaagtccatccttgatgttaccaatgta 390  Q
    ||||||||||||||||||| ||||||||  |||||  ||||||||| | ||||||||||||||   |||  ||| ||||| ||||||||||||    
T  14904772 tccatcaacccaatcaccctcatatatttttccattcgaccatgtgtattttcctttgccatggaaaagatcattcttgaagttaccaatgta 14904864  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 360
Target Start/End: Original strand, 14905376 - 14905455
Alignment:
Q  281 cctttccctgtcttatctccatcaacccaatcacccacatatattgatccatctgaccatgtgcactttcctttgccatg 360  Q
    ||||| |||||||| | ||| |||||||| |||||| |||||||   |||||||||||||||| ||||||| ||||||||    
T  14905376 cctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatg 14905455  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 237 - 343
Target Start/End: Complemental strand, 2998312 - 2998206
Alignment:
Q  237 agaattcaccctcata-cttgtctcctgatggctgtatgaacagtcctttccctgtcttatctccatcaacccaatcacccacatatattgatccatctg 335  Q
    |||||||||||||| | ||||| ||||||||| | ||||| | |||||||||||||| | | | ||||||||||||||||| ||||||||| ||||| ||    
T  2998312 agaattcaccctcaaaacttgt-tcctgatggatatatgatccgtcctttccctgtcctttgttcatcaacccaatcaccctcatatattgttccatttg 2998214  T
Q  336 accatgtg 343  Q
    ||||||||    
T  2998213 accatgtg 2998206  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 360
Target Start/End: Complemental strand, 2998045 - 2997983
Alignment:
Q  298 tccatcaacccaatcacccacatatattgatccatctgaccatgtgcactttcctttgccatg 360  Q
    ||||||||||||||||||| ||||||||| ||||  |||||||||| ||||||| ||||||||    
T  2998045 tccatcaacccaatcaccctcatatattgttccacttgaccatgtgtactttcccttgccatg 2997983  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 361
Target Start/End: Complemental strand, 2997927 - 2997775
Alignment:
Q  209 gtgccattgccatgacggcaattcccaaagaattcaccctcata-cttgtctcctgatggctgtatgaacagtcctttccctgtcttatctccatcaacc 307  Q
    |||||||  ||||||||  |||||| |||||||||||||||| | |||| ||| ||| || | ||||| | |||||||||| ||| | | | ||| ||||    
T  2997927 gtgccatgaccatgacgagaattcctaaagaattcaccctcaaaacttg-ctcttgacggatttatgaccggtcctttcccagtccttttttcattaacc 2997829  T
Q  308 caatcacccacatatattgatccatctgaccatgtgcactttcctttgccatga 361  Q
    ||||||||| |||| |||| ||||  |||||||||| ||||||| |||||||||    
T  2997828 caatcaccctcatagattgttccacttgaccatgtgtactttcccttgccatga 2997775  T

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