View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_31 (Length: 445)
Name: NF5418_low_31
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_31 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 5885858 - 5885427
Alignment:
| Q |
1 |
caaaggataaattcagtaaaaacaacatgtacaaaatgcaagtgaacacctaaagagaaattccaattggtataatcaataattgcttttcttttaaagc |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5885858 |
caaaggataaactcagtaaaaacaacatgtacaaaatgcaagagaacacctaaagagaaattccaattggtgtaatcaataattgcttttcttttaaagc |
5885759 |
T |
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| Q |
101 |
aggaactgttgctggagtttacgtcgcttagaattataaagtacctaacattgctgagcgggctgatactgtcttcaaaatggtgaaagatgccgaacaa |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
5885758 |
aggaactgttgccggagtttacgtcgcttagaattataaagtaccaaacattgctgagcgggctgatactgtcttcaaaatggtgaacgatgccgaataa |
5885659 |
T |
|
| Q |
201 |
agatatagaaacgattaaaatgatcaaataattagttatatataaattaggttcttgtttaaatctttttgtttttaatcattgatactactatagtatc |
300 |
Q |
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| T |
5885658 |
agatatagaaacgattaaaatgatc-aataattagttatatatgaatcaggttcttgtttaaatctttttgtttttactcatggatactactataggatc |
5885560 |
T |
|
| Q |
301 |
aatcaaataactactatgatcaaacatggatcctttcatagtatcattgtgtgtgcgtttacaatattcatcgtgtatcacttcaaattttctcgcgctt |
400 |
Q |
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||||||||| ||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||| ||| ||||||| |||||||||||||||||||||| |
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| T |
5885559 |
aatcaaatatctactatgagcaaacatggatccttacatagtatcattgtgagtgcgtatacaattttcttcgtgtaccacttcaaattttctcgcgctt |
5885460 |
T |
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| Q |
401 |
ttcttttcctcccaaaattaaaatcaatgaaga |
433 |
Q |
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| T |
5885459 |
ttcttttcctcccaaaattaaaatcaatcaaga |
5885427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 45373254 - 45373382
Alignment:
| Q |
64 |
caattggtataatcaataattgcttttcttttaaagcaggaactgttgctggagtttacgtcgcttagaattataaagtacctaacattgctgagcgggc |
163 |
Q |
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|||||||||||||||| |||||||| |||||| ||| ||||||||||| || |||||||| ||| | ||||||||| ||||||||||||||||| |||| |
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| T |
45373254 |
caattggtataatcaagaattgcttctcttttgtagctggaactgttgccggtgtttacgttgctcaaaattataaactacctaacattgctgagagggc |
45373353 |
T |
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| Q |
164 |
tgatactgtcttcaaaatggtgaaagatg |
192 |
Q |
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| T |
45373354 |
tgataccgtcttcaaaatggtcaaagatg |
45373382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 45369973 - 45370079
Alignment:
| Q |
69 |
ggtataatcaataattgcttttcttttaaagcaggaactgttgctggagtttacgtcgcttagaattataaagtacctaacattgctgagcgggctgata |
168 |
Q |
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||||||||||| |||||| ||||||| ||||||||||||| | || |||||||||||| |||| |||||||||||| |||||||| ||| ||||||| |
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| T |
45369973 |
ggtataatcaagggttgcttctcttttatagcaggaactgttaccggtgtttacgtcgctcagaactataaagtacctgacattgctaagctcgctgata |
45370072 |
T |
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| Q |
169 |
ctgtctt |
175 |
Q |
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|| |||| |
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| T |
45370073 |
ctttctt |
45370079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 96258 - 96341
Alignment:
| Q |
109 |
ttgctggagtttacgtcgcttagaattataaagtacctaacattgctgagcgggctgatactgtcttcaaaatggtgaaagatg |
192 |
Q |
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|||| ||||||||||| ||| | ||||||||| | ||||||||||||||| |||||||||| ||||| |||||||| ||||||| |
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| T |
96258 |
ttgccggagtttacgttgctcaaaattataaactgcctaacattgctgagagggctgataccgtcttgaaaatggtcaaagatg |
96341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 9093295 - 9093378
Alignment:
| Q |
109 |
ttgctggagtttacgtcgcttagaattataaagtacctaacattgctgagcgggctgatactgtcttcaaaatggtgaaagatg |
192 |
Q |
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|||| ||||||||||||||| | ||||||||| | |||||||||||||| |||||||||| ||||| |||||||| ||||||| |
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| T |
9093295 |
ttgccggagtttacgtcgctcaaaattataaactgtctaacattgctgagagggctgataccgtcttgaaaatggtcaaagatg |
9093378 |
T |
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