View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_33 (Length: 443)
Name: NF5418_low_33
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 513621 - 514039
Alignment:
| Q |
1 |
aaaccatcatcattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaannnnnnngtttgggggaatggcgtcggagcag |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
513621 |
aaaccatcaccattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaatttttttgtttgggggaatggcgtcggagcag |
513720 |
T |
|
| Q |
101 |
gtttgtgagaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaacctacgatatacaaataaaaaa |
200 |
Q |
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| T |
513721 |
gtttgtgagaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaacctaagatattcaaataaaaaa |
513820 |
T |
|
| Q |
201 |
tggtaagaatgtaatattgatcagttgcaatatgcgataaattatagaatacaagattaaacccaaaaccattagccacaatgcaccactgttcaaataa |
300 |
Q |
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| T |
513821 |
tggtaagaatg-----ttgatcagttgcaatatgtgataaattatagaatacaagattaaacccaaaaccattagccacaatgcaccactgttcaaataa |
513915 |
T |
|
| Q |
301 |
agtctaaattgtcattaaaaaatatataatttctaaattccctaaccttaaaatctatctcatatgacagaagcaatacctttaatgagtcatttaacta |
400 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
513916 |
agtctaaattgtcattaaaaaa-gtataatttctaaattccctaaccttaaaatctatcttatatgacagaagcaatacctttaatgagtcatttaacta |
514014 |
T |
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| Q |
401 |
tagatgaaactttggtataaacttt |
425 |
Q |
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| T |
514015 |
tagatgaaactttggtataaacttt |
514039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 563516 - 563167
Alignment:
| Q |
1 |
aaaccatcatcattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaannnnnnngtttgggggaatggcgtcggagcag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
563516 |
aaaccatcatcattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaatttttttgtttgggggaatggcgtcggagcag |
563417 |
T |
|
| Q |
101 |
gtttgtgagaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaacctacgatata--caaataaaa |
198 |
Q |
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| T |
563416 |
gtttgtga------agctcaacgcaccacgggctgactcgtcttgaaatttgcgagatttgaaattcatcccaattaacctatgatgtattcaaataaaa |
563323 |
T |
|
| Q |
199 |
aatggtaagaatgtaatattgatcagttgcaatatgcgataaattatagaatacaagattaaacccaaaaccattagccacaatgcaccactgttcaaat |
298 |
Q |
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|||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| | ||||||| ||||||||| |
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| T |
563322 |
aatggtaagaatacaatattgatcatttgcaatatgtgataaattattgaatacaagattaaacccaaaaccattagccagagtgcaccattgttcaaat |
563223 |
T |
|
| Q |
299 |
aaagtctaaattgtcattaaaaaatatataatttctaaattccctaaccttaaaat |
354 |
Q |
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||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
563222 |
aaagtttaaattgtcattaaaaaatgtataatttataaattccctaaccttaaaat |
563167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 566687 - 566608
Alignment:
| Q |
109 |
gaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaacctacgatat |
188 |
Q |
| |
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|||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||| ||||| |
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| T |
566687 |
gaaataagttcaacccaccacataccgactcgtcttggaatttgtgagacttgaaattcatcccagttaacctatgatat |
566608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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