View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_34 (Length: 442)
Name: NF5418_low_34
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 30351352 - 30350909
Alignment:
| Q |
1 |
attattaaattaaattgaattaatgaaatatgtaacatgaatggattgatttcaaatatatat--ggtcgagatcaatcaacacnnnnnnnnnnnnnnaa |
98 |
Q |
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| T |
30351352 |
attattaaattaaattgatttaatgaaatatgtaacatgaatggattgatctcaaatatatatatggttgagatcaatcaacacttattttattttttaa |
30351253 |
T |
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| Q |
99 |
--tctgatatctgatctaagaattgattattccgagaacaattgacgcttgtaatgggtggttttattaatgacaaa-----ccaacnnnnnnnccaatg |
191 |
Q |
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| T |
30351252 |
aatttggtatctaatctaagaactgattattctgagaacaattgacgcttgtaatgggtggttttattaatgacaaataataccaacaaaaaa-ccaatg |
30351154 |
T |
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| Q |
192 |
gcatgttcctctaaaagttagctcttgaataatagacaaaattgtaaccaaaacagcctgcaaa-gtagaagnnnnnnnnggtagaatcactaatttata |
290 |
Q |
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| T |
30351153 |
gcatgttcctctaaaagttagctcttgaataatagacaaaattgtaaccacaacagcctgcaaaagtagaa-aaaaaaaaggtagaatcactaatttata |
30351055 |
T |
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| Q |
291 |
agatactttatatttgttgtactagtttagtgtttcaattattactttagaaaaacttattnnnnnnntt------------cacttacaaaaacagtac |
378 |
Q |
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| T |
30351054 |
agatactttatatttgttgtcctagtttagtgtctcaattattaatttagaaaaacttattaaaaaaattcaaaggtagaaccacttacaaaaatagtac |
30350955 |
T |
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| Q |
379 |
aagcaatgaatccaggtttctctcgtttgtctgctttagaagagag |
424 |
Q |
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| T |
30350954 |
aagcaatgaatccaggtttctctcgtttgtctgctttagaagagag |
30350909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 30338706 - 30338642
Alignment:
| Q |
360 |
tcacttacaaaaacagtacaagcaatgaatccaggtttctctcgtttgtctgctttagaagagag |
424 |
Q |
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| T |
30338706 |
tcacttacacaaataaaacaagcaatgtatccaggtttctctcgtttgtctactttggaaaagag |
30338642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30339331 - 30339271
Alignment:
| Q |
1 |
attattaaattaaattgaattaatgaaatatgtaacatgaatgga-ttgatttcaaatatat |
61 |
Q |
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||||||||| |||||||| |||||||| |||||||||||||||| ||||| |||||||||| |
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| T |
30339331 |
attattaaaataaattgatttaatgaag-atgtaacatgaatggatttgatctcaaatatat |
30339271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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