View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418_low_35 (Length: 440)

Name: NF5418_low_35
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418_low_35
NF5418_low_35
[»] chr6 (2 HSPs)
chr6 (1-425)||(33986722-33987146)
chr6 (191-421)||(11074481-11074689)
[»] chr7 (1 HSPs)
chr7 (103-393)||(330352-330642)
[»] chr8 (9 HSPs)
chr8 (138-424)||(31074540-31074827)
chr8 (103-390)||(9625814-9626100)
chr8 (103-323)||(28525276-28525493)
chr8 (103-424)||(28005840-28006145)
chr8 (103-424)||(28063143-28063448)
chr8 (103-202)||(36033178-36033277)
chr8 (25-89)||(31074112-31074177)
chr8 (55-90)||(24199079-24199114)
chr8 (7-88)||(28524858-28524940)
[»] chr1 (6 HSPs)
chr1 (103-425)||(11060115-11060438)
chr1 (103-304)||(44719862-44720063)
chr1 (103-324)||(1408145-1408368)
chr1 (166-259)||(36395702-36395795)
chr1 (296-424)||(44720251-44720380)
chr1 (11-90)||(33342520-33342600)
[»] chr2 (9 HSPs)
chr2 (103-425)||(26585619-26585949)
chr2 (156-425)||(18675627-18675897)
chr2 (112-424)||(14886860-14887171)
chr2 (303-393)||(34582046-34582136)
chr2 (2-100)||(26585173-26585270)
chr2 (6-100)||(14887427-14887522)
chr2 (11-100)||(34582599-34582689)
chr2 (22-100)||(17466757-17466836)
chr2 (38-100)||(34037602-34037665)
[»] chr4 (3 HSPs)
chr4 (103-392)||(24745387-24745681)
chr4 (191-323)||(24752933-24753065)
chr4 (103-211)||(24753073-24753181)
[»] chr5 (4 HSPs)
chr5 (103-282)||(23772931-23773110)
chr5 (103-269)||(28864741-28864907)
chr5 (267-393)||(28864581-28864704)
chr5 (22-100)||(32555475-32555554)


Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 33987146 - 33986722
Alignment:
Q  1 ttgttgtcattttagtctctaacgttaaataatcctcttaattgatgatgtggcaatgttttatgctgaaaaggggtatgaggtgtcacacgaactaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987146 ttgttgtcattttagtctctaacgttaaataatcctcttaactgatgatgtggcaatgttttatgctgaaaaggggtatgaggtgtcacacgaactaaag 33987047  T
Q  101 ggatatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987046 ggatatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttt 33986947  T
Q  201 ttaatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaacttcaattgattatttac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33986946 ttaatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaacttcaattgattatttac 33986847  T
Q  301 aaatattgtcccagtatatttatctgggcatgtgcatttctgcaacatgattgcagaacataaacttaagtcacttgattcagtatttgttttgtagtag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33986846 aaatattgtcccagtatatttatctgggcatgtgcatttctgcaacatgattgcagaacataaacttaagtcacttgattcagtatttgttttgtagtag 33986747  T
Q  401 ccattaaaataatcactgatataat 425  Q
    |||||||||||||||||||||||||    
T  33986746 ccattaaaataatcactgatataat 33986722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 191 - 421
Target Start/End: Complemental strand, 11074689 - 11074481
Alignment:
Q  191 tttcttctttttaatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaacttcaatt 290  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||     |||||||||||||      |||||||||||||||||| |||||||||||||    
T  11074689 tttcttctttttaatcttaatattaactttaaattatactattt-----tttaagaaagatt------ttcaagaatacatattcagctaaacttcaatt 11074601  T
Q  291 gattatttacaaatattgtcccagtatatttatctgggcatgtgcatttctgcaacatgattgcagaacataaacttaagtcacttgattcagtatttgt 390  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |             ||||||||||||| ||||| ||||||||| |||||||||    
T  11074600 gattatttacaaatattgtcctagtatatttatctgcgcatgtgcaat------------atgcagaacataaatttaagccacttgattaagtatttgt 11074513  T
Q  391 tttg-tagtagccattaaaataatcactgata 421  Q
    |||| || |||| |||| |||||| |||||||    
T  11074512 tttgatattagctattataataataactgata 11074481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 183; Significance: 8e-99; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 103 - 393
Target Start/End: Complemental strand, 330642 - 330352
Alignment:
Q  103 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttttt 202  Q
    |||||||||||||||||||||||| |||  | |  | |||||| |||||||| |||| |||||||||||||||||||||  |   |||||||||||||||    
T  330642 atatgaagaattgtttaaggcttttaggcctggctacgaatcacattttcccaaattatgtatttgtatatcttgaattcgtacatggtttcttcttttt 330543  T
Q  203 aatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaacttcaattgattatttacaa 302  Q
    ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  330542 aatttcaatgttaacttcaaattatactatttcattttttaaggaatattattagcttcaagaatacatattcaactaaacttcagttgattatttacaa 330443  T
Q  303 atattgtcccagtatatttatctgggcatgtgcatttctgcaacatgattgcagaacataaacttaagtcacttgattcagtatttgtttt 393  Q
    ||||||||| | |||||||| ||| |||||||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  330442 atattgtcctattatatttaactgagcatgtgcatttctgcagtatgattgtagaacataaacttaagccacttgattcagtatttgtttt 330352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 138 - 424
Target Start/End: Original strand, 31074540 - 31074827
Alignment:
Q  138 atgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttctttttaatctcaatgttaacttcaaattatactatttcat 237  Q
    |||||||| |||||||| |||||||||||||||||||||||||| |||  ||||||||||||| ||||||| | ||||||||||||||||||| |||| |    
T  31074540 atgaatcacattttcccaaattttgtatttgtatatcttgaattccttcatggtttcttctttataatctcgacgttaacttcaaattatactgtttcgt 31074639  T
Q  238 tttttaagaaagattattagcttcaagaatacatattcaactaaacttcaattgattatttacaaatattgtcccagtatatttatctgggcatgtgcat 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||  ||||||||||    
T  31074640 tttttaagaaagattattagcttcaagaatacatattcaactaaacttgaattgattatttacaactattgtcctagtatatttatctaagcatgtgcat 31074739  T
Q  338 ttctgcaacatgattgcagaacataaacttaagtcacttgattcagtattt-gttttgtagtagccattaaaataatcactgatataa 424  Q
    || |||| ||||||||||||||| ||||| ||| ||||| |||||||||||  |||| || ||||||||| |||||| ||| ||||||    
T  31074740 ttttgcagcatgattgcagaacaaaaactcaagccacttcattcagtatttatttttatattagccattataataataacttatataa 31074827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 103 - 390
Target Start/End: Complemental strand, 9626100 - 9625814
Alignment:
Q  103 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttttt 202  Q
    ||||||||||| |||| |||||||||||| | || |||||||| |||||  | |||||||||||||||||||||||||| ||   |||||||||||||||    
T  9626100 atatgaagaatcgtttcaggctttcaggtatggttatgaatcacattttttcaaattttgtatttgtatatcttgaattcctccatggtttcttcttttt 9626001  T
Q  203 aatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaacttcaattgattatttacaa 302  Q
    ||||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||||| |    
T  9626000 aatcttaatgttaacttcaaattatattgtttcattttttaagaaaaattattagctttaagaatacatattcaactaaacttcaattggttgtttacca 9625901  T
Q  303 atattgtcccagtatatttatctgggcatgtgcatttctgcaacatgattgcagaacataaacttaagtcacttgattcagtatttgt 390  Q
    ||||||||  |||||||||||||| |||| ||||||| ||||| |||||| || ||||||||||| || ||||||||||| |||||||    
T  9625900 atattgtcttagtatatttatctgagcatttgcatttatgcaatatgattacataacataaactt-agccacttgattcactatttgt 9625814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 103 - 323
Target Start/End: Original strand, 28525276 - 28525493
Alignment:
Q  103 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttttt 202  Q
    |||||||||||||||| ||| |||||||| |||| |||||||| |||||  | |||| ||||    ||||| ||||||| |||  | |||||||||||||    
T  28525276 atatgaagaattgtttcaggttttcaggtctagttatgaatcacatttttgcaaattctgta----tatatattgaattccttcatagtttcttcttttt 28525371  T
Q  203 aatctcaatgttaacttcaaattatactatttca-ttttttaagaaagattattagcttcaagaatacatattcaactaaacttcaattgattatttaca 301  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  28525372 aatcttaatgttaacttcaaattatactatttcatttttttaagaaagattattagtttcaagaatacatattcaactaaatttcaattgattatttaca 28525471  T
Q  302 aatattgtcccagtatatttat 323  Q
    |||||||||| | |||||||||    
T  28525472 aatattgtcctaatatatttat 28525493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 103 - 424
Target Start/End: Original strand, 28005840 - 28006145
Alignment:
Q  103 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttttt 202  Q
    |||||||||||||||| ||||||| | || |||| |||||||| |||||||| |||| ||||||||||||||||||||| |||  ||||||||||||||     
T  28005840 atatgaagaattgtttcaggcttttaagtctagttatgaatcacattttcccaaattatgtatttgtatatcttgaattccttcatggtttcttctttt- 28005938  T
Q  203 aatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaacttcaattgattatttacaa 302  Q
                     ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28005939 -----------------caaattatactattttattttttaagaaagattattagcttcaaaaatacatattcaactaaacttcaattgattatttacaa 28006021  T
Q  303 atattgtcccagtatatttatctgggcatgtgcatttctgcaacatgattgcag-aacataaacttaagtcacttgattcagta-tttgttttgtagtag 400  Q
    |||||||||   ||||||||| || ||||||| |||| || |  |||||||||| || | ||||||||| | ||||||||| || ||  |||| || |||    
T  28006022 atattgtcctgatatatttatatgagcatgtggatttatgtagtatgattgcagaaaaaaaaacttaagcctcttgattcaatacttatttttatattag 28006121  T
Q  401 ccattaaaataatcactgatataa 424  Q
    | |||| |||||||||||||||||    
T  28006122 ctattataataatcactgatataa 28006145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 103 - 424
Target Start/End: Original strand, 28063143 - 28063448
Alignment:
Q  103 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttttt 202  Q
    |||||||||||||||| ||||||| | || |||| |||||||| |||||||| |||| ||||||||||||||||||||| |||  ||||||||||||||     
T  28063143 atatgaagaattgtttcaggcttttaagtctagttatgaatcacattttcccaaattatgtatttgtatatcttgaattccttcatggtttcttctttt- 28063241  T
Q  203 aatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaacttcaattgattatttacaa 302  Q
                     ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28063242 -----------------caaattatactattttattttttaagaaagattattagcttcaaaaatacatattcaactaaacttcaattgattatttacaa 28063324  T
Q  303 atattgtcccagtatatttatctgggcatgtgcatttctgcaacatgattgcag-aacataaacttaagtcacttgattcagta-tttgttttgtagtag 400  Q
    |||||||||   ||||||||| || ||||||| |||| || |  |||||||||| || | ||||||||| | ||||||||| || ||  |||| || |||    
T  28063325 atattgtcctgatatatttatatgagcatgtggatttatgtagtatgattgcagaaaaaaaaacttaagcctcttgattcaatacttatttttatattag 28063424  T
Q  401 ccattaaaataatcactgatataa 424  Q
    | |||| |||||||||||||||||    
T  28063425 ctattataataatcactgatataa 28063448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 202
Target Start/End: Original strand, 36033178 - 36033277
Alignment:
Q  103 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttttt 202  Q
    |||||||||||||||| | |||||||||| | || |||||||| |||||| | |||| ||||||||||||||||||||| |||  |||||||||||||||    
T  36033178 atatgaagaattgtttcaagctttcaggtctggttatgaatcacattttctcaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 36033277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 31074112 - 31074177
Alignment:
Q  25 ttaaataatcctcttaattgatgatgtggcaa-tgttttatgctgaaaaggggtatgaggtgtcac 89  Q
    |||||||||  | |||| |||||||||||||| ||||||||||| | |||||||||||||||||||    
T  31074112 ttaaataattttgttaactgatgatgtggcaaatgttttatgctaacaaggggtatgaggtgtcac 31074177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 24199079 - 24199114
Alignment:
Q  55 aatgttttatgctgaaaaggggtatgaggtgtcaca 90  Q
    ||||||||||||||| ||||||||||||||||||||    
T  24199079 aatgttttatgctgacaaggggtatgaggtgtcaca 24199114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 28524858 - 28524940
Alignment:
Q  7 tcattttagtctctaacgttaaataatcctcttaattgatgatgtggcaatg-ttttatgctgaaaaggggtatgaggtgtca 88  Q
    |||||||||||||| ||||||||||||  | |||| |||||||||||||| | ||||||| ||| || | |||||| ||||||    
T  28524858 tcattttagtctctgacgttaaataattttgttaactgatgatgtggcaaagattttatgttgacaaagagtatgaagtgtca 28524940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 103 - 425
Target Start/End: Original strand, 11060115 - 11060438
Alignment:
Q  103 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttttt 202  Q
    |||| ||||||| ||| || ||||||| | | || |||||||| |||||  | |||||||||||||||| ||||||||| |||  |||||||||||||||    
T  11060115 atatcaagaattatttcagactttcagatctggttatgaatcacattttttcaaattttgtatttgtatttcttgaattccttcatggtttcttcttttt 11060214  T
Q  203 aatctcaatgttaacttcaaattatactatttca-ttttttaagaaagattattagcttcaagaatacatattcaactaaacttcaattgattatttaca 301  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  11060215 aatctcaaggttaacttcaaattatactatttaaattttttaagaaagattgttatcttca-gaatacatattcaactaaacttcaattgattatttaca 11060313  T
Q  302 aatattgtcccagtatatttatctgggcatgtgcatttctgcaacatgattgcagaacataaacttaagtcacttgattcagtatttg-ttttgtagtag 400  Q
    |||||||||||| ||||||||| |  |||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||| || |||| || |||    
T  11060314 aatattgtcccaatatatttatttaagcatgtgcatttctgcagtatgattgcagaacataaacttaagaaacttgattcagtatatgtttttatattag 11060413  T
Q  401 ccattaaaataatcactgatataat 425  Q
    | |||| |||||||||| |||||||    
T  11060414 caattataataatcactcatataat 11060438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 103 - 304
Target Start/End: Original strand, 44719862 - 44720063
Alignment:
Q  103 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttttt 202  Q
    ||||||| |||||||| | ||||| || | | || |||||||| |||||||| |||||||||||||||||||||||||| |||  | |||||||||||||    
T  44719862 atatgaaaaattgtttcaagcttttagatctggttatgaatcacattttcccaaattttgtatttgtatatcttgaattccttcatagtttcttcttttt 44719961  T
Q  203 aatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaacttcaattgattatttacaa 302  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||| ||    
T  44719962 aatctcgatgttaacttcaaattatactatttcattttataagaaagattattagcttcaagaataccaattcaaccaaacttcaattgattatttataa 44720061  T
Q  303 at 304  Q
    ||    
T  44720062 at 44720063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 103 - 324
Target Start/End: Original strand, 1408145 - 1408368
Alignment:
Q  103 atatgaagaattgtttaaggctttcaggtttag-tcatgaatcatattttcccgaattt-tgtatttgtatatcttgaattgctttgtggtttcttcttt 200  Q
    |||||||||||| ||| | |||||||||||| | | |||||||| |||||||| || || ||||||| |||||||| |||| |||  | || | ||||||    
T  1408145 atatgaagaattttttcaagctttcaggttttggttatgaatcacattttcccaaaattctgtatttttatatcttaaattccttcattgtcttttcttt 1408244  T
Q  201 ttaatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaacttcaattgattatttac 300  Q
    ||| |||||||||||||||||||||||   ||||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||||||||||||    
T  1408245 ttattctcaatgttaacttcaaattatgtcatttcattttttatgaaagattattagctttatgaatacatattcaactaaaattcaattgattatttac 1408344  T
Q  301 aaatattgtcccagtatatttatc 324  Q
    ||| ||| ||| ||||||||||||    
T  1408345 aaacattatcctagtatatttatc 1408368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 166 - 259
Target Start/End: Original strand, 36395702 - 36395795
Alignment:
Q  166 ttgtatatcttgaattgctttgtggtttcttctttttaatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagct 259  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  36395702 ttgtatatcttgaattccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattagct 36395795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 424
Target Start/End: Original strand, 44720251 - 44720380
Alignment:
Q  296 tttacaaatattgtcccagtatatttatctgggcatgtgcatttctgcaacatgattgcagaacataaacttaagtcacttgattcagtatttg-ttttg 394  Q
    |||||||||||||||| |  |||||||| || |||||||||||| |||   |||||| |  |||| ||||||||| |||||||||| ||||||| ||||     
T  44720251 tttacaaatattgtcctaacatatttatttgagcatgtgcatttttgcggtatgattccttaacagaaacttaagccacttgattcggtatttgttttta 44720350  T
Q  395 tagtagccattaaaataatcactgatataa 424  Q
    || |||| |||| ||||||||| |||||||    
T  44720351 tattagctattataataatcaccgatataa 44720380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 33342520 - 33342600
Alignment:
Q  11 tttagtctctaacgttaaataatcctcttaattgatgatgtggcaat-gttttatgctgaaaaggggtatgaggtgtcaca 90  Q
    |||||||||| ||||||||||||  | |||| |||||||||| |||  |||||||||||| |||| |||||||||||||||    
T  33342520 tttagtctctgacgttaaataattatgttaagtgatgatgtgacaaaagttttatgctgacaaggagtatgaggtgtcaca 33342600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 103 - 425
Target Start/End: Complemental strand, 26585949 - 26585619
Alignment:
Q  103 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtata------tcttgaattgctttgtggtttctt 196  Q
    |||||||||||||||| |||||| |||||||  | |||||||| ||||| || |||| |||||||| ||       ||||||||| | |  |||||||||    
T  26585949 atatgaagaattgtttcaggcttccaggtttgattatgaatcacatttttccaaattatgtatttgcattagcatttcttgaattccgtcatggtttctt 26585850  T
Q  197 ctttttaatctcaatgttaacttcaaattatactatttcatttttt-aagaaagattattagcttcaagaatacatattcaactaaacttcaattgatta 295  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||||    
T  26585849 ctttttaatctcaatgtcaactttaaattatactattttatttttttaagaaagattattatcttaaagaatacatattcaactaaacttcacttgatta 26585750  T
Q  296 tttacaaatattgtcccagtatatttatctgggcatgtgcatttctgcaacatgattgcagaacataaacttaagtcacttgattcagtatttgtttt-g 394  Q
    |||| ||||||||||| |||||||||||||| | |||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||      
T  26585749 tttataaatattgtcctagtatatttatctgagtatgtgcatttctgcagtatgattgcagaacataaacttaagtcacttgattcaatatttgttttca 26585650  T
Q  395 tagtagccattaaaataatcactgatataat 425  Q
    || |||| |||| || ||||| |||||||||    
T  26585649 tattagctattataacaatcattgatataat 26585619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 156 - 425
Target Start/End: Original strand, 18675627 - 18675897
Alignment:
Q  156 aattttgtatttgtatatcttgaattgctttgtggtttcttctttttaatctcaatgttaacttcaaattatactatttcattttttaagaaagattatt 255  Q
    |||| |||||||||||| |||||||| |||  |||||||||||||||||||||||| |||||||||  |||||||||||||||| |||||||||||||||    
T  18675627 aattctgtatttgtataccttgaattccttcatggtttcttctttttaatctcaatattaacttcaggttatactatttcatttcttaagaaagattatt 18675726  T
Q  256 agcttcaagaatacatattcaactaaacttcaattgattatttacaaatattgtcccagtatatttatctgggcatgtgcatttctgcaacatgattgca 355  Q
    ||||| || ||||||||||||||||||||||||||||||||| | ||||||||||| | ||||||||| || | |||||||||| || |  |||||||||    
T  18675727 agctttaaaaatacatattcaactaaacttcaattgattattcaaaaatattgtcctaatatatttatttgagaatgtgcatttatgtagtatgattgca 18675826  T
Q  356 gaacataaacttaagtcacttgattcagtatttgtttt-gtagtagccattaaaataatcactgatataat 425  Q
    | ||| ||||||||| || ||| || ||||||||||||  || |||| |||| ||||||||||| ||||||    
T  18675827 ggacagaaacttaagccagttgttttagtatttgttttcatattagctattataataatcactggtataat 18675897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 112 - 424
Target Start/End: Original strand, 14886860 - 14887171
Alignment:
Q  112 attgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttctttttaatctcaat 211  Q
    ||||||| | |||||||||| | ||  ||||||| |||||||| |||| |||||||||||||||| |||| |||  |  ||||| |||||||||||||||    
T  14886860 attgtttcaagctttcaggtctggttgtgaatcacattttcccaaattctgtatttgtatatcttaaattccttcataatttctcctttttaatctcaat 14886959  T
Q  212 gttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaacttcaattgattatttacaaatattgtcc 311  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||||||  |||||||||| |||||| |||||||||||||||||||||     
T  14886960 gttaacttcaaattacactattttattttttaagaaatattattagtttcaagaatac--attcaactaagcttcaaatgattatttacaaatattgtct 14887057  T
Q  312 cagtatatttatctgggcatgtgcatttctgcaacatgattgcagaacataaacttaagtcacttgattcagtatttgtttt-gtagtagccattaaaat 410  Q
     || ||||||||||| ||||||||||||||| |  ||||||||| |||  ||||||||| || |  |||  |||||||||||  || |||| |||| |||    
T  14887058 tagaatatttatctgagcatgtgcatttctgtagtatgattgcaaaacggaaacttaagccagtgaatttggtatttgttttcatattagctattataat 14887157  T
Q  411 aatcactgatataa 424  Q
    ||||| ||||||||    
T  14887158 aatcagtgatataa 14887171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 303 - 393
Target Start/End: Original strand, 34582046 - 34582136
Alignment:
Q  303 atattgtcccagtatatttatctgggcatgtgcatttctgcaacatgattgcagaacataaacttaagtcacttgattcagtatttgtttt 393  Q
    ||||||||| |||||||||||||| |||||||||||||||||  ||||||| |||||| ||||||||| ||||||||| | ||||||||||    
T  34582046 atattgtcctagtatatttatctgagcatgtgcatttctgcagtatgattgtagaacagaaacttaagccacttgattaattatttgtttt 34582136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 26585173 - 26585270
Alignment:
Q  2 tgttgtcattttagtctctaacgttaaataatcctcttaattgatgatgtggcaatgttttatgctgaaaaggggtatgaggtgtcacacgaactaaag 100  Q
    |||| ||| ||||||||||| |||||||||||  | ||||||||||||||| | || ||||||| ||| |||| ||||||||||||||| | |||||||    
T  26585173 tgttatcactttagtctctagcgttaaataattatgttaattgatgatgtgac-atattttatgttgacaaggagtatgaggtgtcacagggactaaag 26585270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 14887522 - 14887427
Alignment:
Q  6 gtcattttagtctctaacgttaaataatcctcttaattgatgatgtggcaa-tgttttatgctgaaaaggggtatgaggtgtcacacgaactaaag 100  Q
    |||| |||| |||||| |||||||||||  | |||| |||||||||| ||| ||||||||||| | |||| ||||||||||||||| | |||||||    
T  14887522 gtcactttaatctctagcgttaaataattttgttaactgatgatgtgacaaatgttttatgctaacaaggagtatgaggtgtcacagggactaaag 14887427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 34582689 - 34582599
Alignment:
Q  11 tttagtctctaacgttaaataatcctcttaattgatgatgtggcaatg-ttttatgctgaaaaggggtatgaggtgtcacacgaactaaag 100  Q
    ||||||| || ||||||||||||  | | || |||| ||||||||| | ||||||||||| ||| |||||||||||||||| |||||||||    
T  34582689 tttagtccctgacgttaaataattatatcaactgatcatgtggcaaaggttttatgctgacaagaggtatgaggtgtcacatgaactaaag 34582599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 17466836 - 17466757
Alignment:
Q  22 acgttaaataatcctcttaattgatgatgtggca-atgttttatgctgaaaaggggtatgaggtgtcacacgaactaaag 100  Q
    |||||||||||| || |||| |||||||||| || |||||||| | ||| ||||  |||||||||||||||| |||||||    
T  17466836 acgttaaataattctgttaagtgatgatgtgacacatgttttaggatgacaaggcatatgaggtgtcacacgcactaaag 17466757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 34037665 - 34037602
Alignment:
Q  38 ttaattgatgatgtggca-atgttttatgctgaaaaggggtatgaggtgtcacacgaactaaag 100  Q
    |||| |||||||||| || |||||||||||||| |||| ||||||||||||||||  |||||||    
T  34037665 ttaagtgatgatgtgacacatgttttatgctgacaaggagtatgaggtgtcacacagactaaag 34037602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 103 - 392
Target Start/End: Complemental strand, 24745681 - 24745387
Alignment:
Q  103 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatat--cttgaat---tgctttgtggtttcttc 197  Q
    |||||||||||||| | ||||||| |||| |||| |||||||| ||||| || |||| |||||||||||||  |||||||   | |||| ||||||||||    
T  24745681 atatgaagaattgtctcaggctttaaggtctagttatgaatcacatttttccaaattctgtatttgtatatatcttgaataattcctttatggtttcttc 24745582  T
Q  198 tttttaatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaacttcaattgattatt 297  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  24745581 tttttaatctcaatgttaattttaaattgtactatttcattttttaagaaagactattagcttcaagaatatatattcaactaaacttcaattgattatt 24745482  T
Q  298 tacaaatattgtcccagtatatttatctgggcatgtgcatttctgcaacatgattgcagaacataaacttaagtcacttgattcagtatttgttt 392  Q
    |||||||||||||  ||| |||||||  | |||||||||||| |  |  |||||||||||||| |||||||||||| |||||| |||||||||||    
T  24745481 tacaaatattgtcatagtctatttattagagcatgtgcatttatatagtatgattgcagaacagaaacttaagtcatttgatttagtatttgttt 24745387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 191 - 323
Target Start/End: Complemental strand, 24753065 - 24752933
Alignment:
Q  191 tttcttctttttaatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaacttcaatt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |||||||    
T  24753065 tttcttctttttaatctcaatgttaacttcaaattatactatttcattttctaagaaagattattagcttctagaatagatattcaactaaagttcaatt 24752966  T
Q  291 gattatttacaaatattgtcccagtatatttat 323  Q
     |||||||||||||||||||| ||| |||||||    
T  24752965 aattatttacaaatattgtcctagtctatttat 24752933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 24753181 - 24753073
Alignment:
Q  103 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttttt 202  Q
    ||||||||||||||||   ||||| |||| |||| |||||||| ||||| || |||| ||||||||| ||||||||||| |||| || ||||||||||||    
T  24753181 atatgaagaattgttttgagctttgaggtctagttatgaatcacatttttccaaattctgtatttgtttatcttgaattcctttatgatttcttcttttt 24753082  T
Q  203 aatctcaat 211  Q
    |||||||||    
T  24753081 aatctcaat 24753073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 103 - 282
Target Start/End: Complemental strand, 23773110 - 23772931
Alignment:
Q  103 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttttt 202  Q
    |||||||||||| ||| ||| |||  ||| | || |||||||| ||||| |  |||| ||||||||||||||||||||| |||  |||||||||||||||    
T  23773110 atatgaagaattattttaggttttgtggtctggttatgaatcacatttttctaaattctgtatttgtatatcttgaatttcttcatggtttcttcttttt 23773011  T
Q  203 aatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  23773010 aatctcaatgttaacttcaaattatactatttcattttttaagaaagattatttgcttcaaaaatacatattcaactaaa 23772931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 103 - 269
Target Start/End: Complemental strand, 28864907 - 28864741
Alignment:
Q  103 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttttt 202  Q
    |||||||||||||||| |||||||||||| |  | |||||||  |||||||| |||| |||||||||||||||||||||  ||  |||||||||||||||    
T  28864907 atatgaagaattgttttaggctttcaggtctgattatgaatcgcattttcccaaattatgtatttgtatatcttgaattcgttcttggtttcttcttttt 28864808  T
Q  203 aatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatac 269  Q
    ||| |||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  28864807 aatttcaatgttaacttcaaatcatactatttcattttttaaaagagattattagcttcaagaatac 28864741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 267 - 393
Target Start/End: Complemental strand, 28864704 - 28864581
Alignment:
Q  267 tacatattcaactaaacttcaattgattatttacaaatattgtcccagtatatttatctgggcatgtgcatttctgcaacatgattgcagaacataaact 366  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| || |||||| ||||| |   | |||||||  ||| |||||||    
T  28864704 tacatattcaactgaacttcaattgattatttacaaatattgtcctattatatttatatgagcatgttcatttgt---atatgattgttgaatataaact 28864608  T
Q  367 taagtcacttgattcagtatttgtttt 393  Q
    |||| ||||||||||||||||||||||    
T  28864607 taagccacttgattcagtatttgtttt 28864581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 32555554 - 32555475
Alignment:
Q  22 acgttaaataatcctcttaattgatgatgtggcaatg-ttttatgctgaaaaggggtatgaggtgtcacacgaactaaag 100  Q
    ||||||||||||  | |||||||||||| || ||| | ||||||||||| |||| ||||||||||||||| | |||||||    
T  32555554 acgttaaataattatgttaattgatgatatgacaaaggttttatgctgacaaggagtatgaggtgtcacatggactaaag 32555475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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