View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_36 (Length: 440)
Name: NF5418_low_36
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 26603873 - 26604266
Alignment:
| Q |
19 |
aaggttgagaaatcttcaagtgcacattttgaggagtatgcgaattgctagagnnnnnnnntcaaaatgttgaagcctcgaaatcaaagagtttatatgg |
118 |
Q |
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| T |
26603873 |
aaggttgagaaatcttcaagtgcacattttgaggagtatgcgaattgctagagaaaaaaaatcaaaatgttgaagcctcgaaatca-------------- |
26603958 |
T |
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| Q |
119 |
ggactatatgaagcaatagtttttatttttctctagataattcttttgcatatgtttggttgagtttttatacctgccgagtcttttgaaacacgcttgt |
218 |
Q |
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| T |
26603959 |
------tatgaagcaatagtttttatttttctctagataattcttttgcatatgtttggttgagtttttatacctgcagagtcttttgaaacacacttgt |
26604052 |
T |
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| Q |
219 |
ttcaagtgctcatacttgtgacattgatgttacacttatgagttgtttttgttcttggaatatggatattgaaacaggcatctatctccattaacgacaa |
318 |
Q |
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| T |
26604053 |
ttcaagtgctcatacttgtgacattgatgttacacttatgagttgtttttgttcttagaatatggatattgaaacaagcatctatctccattaacgacaa |
26604152 |
T |
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| Q |
319 |
taagatttattctttctacttttacatttttctaacaatacattactccataatttgaaacacaatttaatagcttagacttagagcaagttgtatgagg |
418 |
Q |
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| T |
26604153 |
taagatttattctttctacttttacatttttctaacgatacattactccataatttgaaacacaatttaatggcttagacttagagcaagttgtatgagg |
26604252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 192 - 428
Target Start/End: Original strand, 26611552 - 26611777
Alignment:
| Q |
192 |
ctgccgagtcttttgaaacacgcttgtttcaagtgctcatacttgtgacattgatgttacacttatgagttgtttttgt-tcttggaatatggatattga |
290 |
Q |
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|||| ||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| |||||||||| |||| |
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| T |
26611552 |
ctgcagagtcttttcaaacacatttgtttcaagtgctcatacttgcgacattgatgttacacttatgagttgttttgttctcttagaatatggat-ttga |
26611650 |
T |
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| Q |
291 |
aacag--gcatctatctccattaacgacaataagatttattctttctacttttacatttttctaacaatacattactccataatttgaaacacaatttaa |
388 |
Q |
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||| |||||||||||||||||||||||||||||| || ||| |||||| ||| | |||||||| |||||||||||||||||||| |
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| T |
26611651 |
gacaaaagcatctatctccattaacgacaataagatt--ttattt-----------tttttccaacgaaacattactggataatttgaaacacaatttac |
26611737 |
T |
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| Q |
389 |
tagcttagacttagagcaagttgtatgaggacctggttct |
428 |
Q |
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| T |
26611738 |
tggcttagacttggtgcaagttgtatgaggacctggttct |
26611777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 26611455 - 26611524
Alignment:
| Q |
121 |
actatatgaagcaatagtttttatttttctctagataattcttttgcatatgtttggttgagtttttata |
190 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26611455 |
actatatgaagcaatagtttttgtttttctctagataattcttttgtatatgtttggttgagtttttata |
26611524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 322
Target Start/End: Original strand, 26596445 - 26596576
Alignment:
| Q |
192 |
ctgccgagtcttttgaaacacgcttgtttcaagtgctcatacttgtgacattgatgttacacttatgagttgtttttgttct-tggaatatggatattga |
290 |
Q |
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|||| ||||||||| |||||| ||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||| | |||||||||| |||| |
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| T |
26596445 |
ctgcagagtcttttcaaacacacttgtttcaagtgcttatacttaagacattgatgttacacttatgagttg-gtttgttctctagaatatggat-ttga |
26596542 |
T |
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| Q |
291 |
aac--aggcatctatctccattaacgacaataag |
322 |
Q |
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| T |
26596543 |
gacaaaagcatctatctctattaacgacaataag |
26596576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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