View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_38 (Length: 434)
Name: NF5418_low_38
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 418
Target Start/End: Original strand, 53097605 - 53098011
Alignment:
| Q |
21 |
agaataaataaccttgaaaagtagcattagtactctcctcttgttcctgagaaaccgaattcttcattaacgattcacggtatacttcattgtcagcatt |
120 |
Q |
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| T |
53097605 |
agaataaataaccttgaaaagtagcattagtactctcctcttg------agaaaccgaattcttcagtaacgattcacggtatacttcattgtcagcatt |
53097698 |
T |
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| Q |
121 |
agtaccacaattggtaggaaacattccagccaaagcatagagtgtctctgcaacctcttgctcatcttttgttatgggccccggtacaacttgtttctac |
220 |
Q |
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| T |
53097699 |
agtaccacaactggtaggaaacattccagccaaagcatagagtgtctctgcaacctcttgctcatcttttgttatgggccccggtacaacttgtttctac |
53097798 |
T |
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| Q |
221 |
aaaagcaaaattacatgaaattnnnnnnnngt-------------ataaaggataaagttttaaatca---taataaagaggtttagtaatactcacttt |
304 |
Q |
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| T |
53097799 |
aaaagcaaaattacatgaaatt-aaaaaaagtaataaaaaggaaaataaaggataaagttttaaatcatactaataaagaggtttagtaatactcacttt |
53097897 |
T |
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| Q |
305 |
ggatttctttatgctatcttttttaggagattctgctctttggaacttatggttcaacttttctgaatcagttaaaacggattcgcgaccccgtttcttc |
404 |
Q |
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| T |
53097898 |
ggatttctttatgctatcttttttaggagattctgctctttggaacttatggttcaacttttctgaatcagttaaaacggattcgcgaccccgtttcttc |
53097997 |
T |
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| Q |
405 |
attgctgaaattat |
418 |
Q |
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| T |
53097998 |
attgctgaaattat |
53098011 |
T |
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Back To:
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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 8021307 - 8021246
Alignment:
| Q |
136 |
aggaaacattccagccaaagcatagagtgtctctgcaacctcttgctcatcttttgttatgg |
197 |
Q |
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| T |
8021307 |
aggaaacattgcagccaaggcatacagtgtctcagctacctcttcctcatcttttgtgatgg |
8021246 |
T |
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