View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_40 (Length: 415)
Name: NF5418_low_40
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 31647154 - 31646768
Alignment:
| Q |
13 |
aatatccttttttcagtagctacatatggtttattatgtgcatgggattcctacaattagagaatataccgcattcacacagtcgagatattggtggtcg |
112 |
Q |
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| T |
31647154 |
aatatccttttttcagtagctacatatggtttattatgtgcatgggattcctacaattagagaatataccgcattcacacagtcgagatattggtggtcg |
31647055 |
T |
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| Q |
113 |
tttgatcaagattagacggtccnnnnnnntgaatattgtcatttttattaatacaaggaatttgtgacagcaagggatccttctatgaacctgaattcct |
212 |
Q |
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| T |
31647054 |
tttgatcaagattagacggtccaaaaaaatgcatattgtcatttttattaatacaaggaatttgtgacagcaagggatccttctatgaacctgaattcct |
31646955 |
T |
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| Q |
213 |
tgcagtcggcgactgcacactttcaactgagactgtttggtcgagatcagacggtccagatatcaagcttggtcattttagtttttaaagaatcaaaatc |
312 |
Q |
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| T |
31646954 |
tgcagtcggtgactgcacactttcaactgagactgtttggtcgagatcagacggtccagatatcaagcttggtcattttagtttttaaagaatcaaaatc |
31646855 |
T |
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| Q |
313 |
atcttctttcttggacggtccgctcttgatcaaattgtcac-aattccctaactgcgtgaatgcgatgaatctattactataggaat |
398 |
Q |
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| T |
31646854 |
atcttctttcttggacggtccgctcttgatcaaattgttacaaatgccctaactgcgtgaatgcgaggaatctattactataggaat |
31646768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 31465251 - 31465192
Alignment:
| Q |
245 |
ctgtttggtcgagatcagacggtccagatatcaagcttggtcattttagtttttaaagaa |
304 |
Q |
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| T |
31465251 |
ctgtttggtcaagatcagacggtccagatcttaaacttggtaattttagtttttgaagaa |
31465192 |
T |
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