View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_42 (Length: 405)
Name: NF5418_low_42
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 111 - 390
Target Start/End: Original strand, 37477816 - 37478095
Alignment:
| Q |
111 |
gatgatacctggccacaaacattgctacacaaatcatcagnnnnnnnagaacaataattccctccagtttcacccatcatccaccacattttcgcgttta |
210 |
Q |
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| T |
37477816 |
gatgatacctggccacaaacattgctacacaaatcatcagtttttttagaacaataattccctccagtttcacccatcatccaccacattttcgcgttta |
37477915 |
T |
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| Q |
211 |
ggtttcaatgaaatcaaaaaaccagatcgatcgattgattgaaccaccgatcctcaaaaagaaatgtcgtagatcgtggtttagaagaacaagttttgaa |
310 |
Q |
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| T |
37477916 |
ggtttcaatgaaatcaaaaaaccagatcgatcgattgattgaaccaccgatcctcaaaaagaaatgtcgtagatcgtggtttagaagaacaagttttgaa |
37478015 |
T |
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| Q |
311 |
tcgaagaaatcttagtaaagaaggaaagaaacgacgcaaacgtgcgttgtttccaaacgcaaaaacggggttttgagatt |
390 |
Q |
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| T |
37478016 |
tcgaagaaatcttagtaaagaagcaaagaaacgacgcaaacgtgcgttgtttccaaacgcaaaaacggggttttgagatt |
37478095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 37477716 - 37477755
Alignment:
| Q |
14 |
agacactaaattaaacttaaaatttcattgatattatact |
53 |
Q |
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| T |
37477716 |
agacactaaattaaacttaaaaattcattgatattatact |
37477755 |
T |
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