View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_43 (Length: 400)
Name: NF5418_low_43
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 61 - 386
Target Start/End: Complemental strand, 999225 - 998900
Alignment:
| Q |
61 |
cattctacattataattgtttgaatttcatattctactagagcttatgcattgtatgaatttcatatgacaggaaattgctagacatatctagtatttct |
160 |
Q |
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| T |
999225 |
cattctacattataattgtttgaatttcatattctactagagcttatgcattgtatgaatttcatatgacaggaaattgctagacatatctagtatttct |
999126 |
T |
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| Q |
161 |
ggtagatctctatgttattttcttcacaatgtttgattctggttacaagtcacagtatattgaaggtcagaaggagaaatttgtgaggtatttttatttt |
260 |
Q |
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| T |
999125 |
ggtagatctctatgttattttcttcacaatgtttgattctggttacaagtcacagtatattgaaggtcagaaggagaaatttgtgaggtatttttatttt |
999026 |
T |
|
| Q |
261 |
tggatataacatatcaatgtgattggttannnnnnnattcttttcttatctcaactctccggttctcgagggaaagggactctattaacataagcatctt |
360 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
999025 |
tggatataacatatcaatgtgattggttatttttttattcttttcttatctcaactctccggttctcgagggaaagggactctattaacataagcatctt |
998926 |
T |
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| Q |
361 |
tcagactaatatacagtggatgatgt |
386 |
Q |
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|||||||||||||||||||||||||| |
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| T |
998925 |
tcagactaatatacagtggatgatgt |
998900 |
T |
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