View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_45 (Length: 380)
Name: NF5418_low_45
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 39210759 - 39211121
Alignment:
| Q |
1 |
attaggtgtcacaggagcagctaagaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattgga |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39210759 |
attaggtgtcacaggagcagctaacaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattgga |
39210858 |
T |
|
| Q |
101 |
gaaaatggtccatcttatcaatttaagcagtatttctagaagaattagtaata---ttaattatgccgcttcatattttttgttttcaaagcattataga |
197 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
39210859 |
gaaaatggtccatcttatcaatttaagcagtatttctggaagaattagtaatagtattaattatgccacttcatattttt-gttttcaaagcattataga |
39210957 |
T |
|
| Q |
198 |
gttggttctattctgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatt |
297 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39210958 |
gt-ggttctattctgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaattaacaaattgtgagatg |
39211056 |
T |
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| Q |
298 |
tactcttattatttgccttgtgtactttctgctaccaagttgggtattgaggaaatattatcatt |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39211057 |
tactcttattatttgccttgtgtactttctgctaccaagttgggtattgaggaaatattatcatt |
39211121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 27510174 - 27509815
Alignment:
| Q |
1 |
attaggtgtcacaggagcagctaagaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattgga |
100 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27510174 |
attaggtgtcacgggagcagctaacaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattgga |
27510075 |
T |
|
| Q |
101 |
gaaaatggtccatcttatcaatttaagcagtatttctagaagaattagtaatattaattatgccgcttcatattttttgttttcaaagcattatagagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | |
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| T |
27510074 |
gaaaatggtccatcttatcaatttaagcagtatttctggaagaattagtaatattaattatgcggcttcatat-ttttgttttcaaagcattatagag-t |
27509977 |
T |
|
| Q |
201 |
ggttctattctgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatttac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27509976 |
ggttctattctgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatgtac |
27509877 |
T |
|
| Q |
301 |
tcttattatttgccttgtgtactttctgctaccaagttgggtattgaggaaatattatcatt |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||| |
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| T |
27509876 |
tcttattatttgccttgtgtactttctgctacgaagttgggtattaaggaaatactatcatt |
27509815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 27 - 362
Target Start/End: Original strand, 27271258 - 27271589
Alignment:
| Q |
27 |
atagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaa |
126 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |
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| T |
27271258 |
atagggttgtctatcattgtgcgcctccaatgttggtgttgagaacaaaaatgcctccatcagcaagcactggaggaaatggtccatcttatcaatttaa |
27271357 |
T |
|
| Q |
127 |
gcagtatttctagaagaattagtaatattaattatgccgcttcatattttttgttttcaaagcattatagagttggttctattctgagttgagaaatgta |
226 |
Q |
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||| ||||||| |||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
27271358 |
gcactatttctggaagaattagtaatattaatcatgtcgctttatattttt-gttttcaaagcattagag---tggttctattctgagttgagaaatgta |
27271453 |
T |
|
| Q |
227 |
ctcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatttactcttattatttgccttgtgtactttc |
326 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |
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| T |
27271454 |
ctctattggttgtgtgtactttttagcactttagtgatttgatgattaagtaatcaacaaattgtgagatgtactcttattagttgccttatgtactttc |
27271553 |
T |
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| Q |
327 |
tgctaccaagttgggtattgaggaaatattatcatt |
362 |
Q |
| |
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|||| ||||||| || ||| |||||| ||||||||| |
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| T |
27271554 |
tgctgccaagttcggcattaaggaaaaattatcatt |
27271589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 38 - 362
Target Start/End: Complemental strand, 29707587 - 29707267
Alignment:
| Q |
38 |
tatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttct |
137 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
29707587 |
tatcattgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcactggaggaaatggtccatcttatcaatttaagtagtatttct |
29707488 |
T |
|
| Q |
138 |
agaagaattagtaatattaattatgccgcttcatattttttgttttcaaagcattatagagttggttctattctgagttgagaaatgtactcttttggtt |
237 |
Q |
| |
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|||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
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| T |
29707487 |
tgaagaattagtaatattaatcatgtcgctttatattttt-gttttcaaagcattagag---tggttctattctgagttgagaaatgtactctattggtt |
29707392 |
T |
|
| Q |
238 |
gtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatttactcttattatttgccttgtgtactttctgctaccaagt |
337 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |
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| T |
29707391 |
gtgtgtactttttagcactttagtgatttgatgattaagtaatcaacaaattgtgagatgtactcttattagttgccttatgtactttctgctaccaagt |
29707292 |
T |
|
| Q |
338 |
tgggtattgaggaaatattatcatt |
362 |
Q |
| |
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|||||||| |||||| ||||||||| |
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| T |
29707291 |
tgggtattaaggaaaaattatcatt |
29707267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 211 - 362
Target Start/End: Complemental strand, 42093510 - 42093354
Alignment:
| Q |
211 |
tgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatttactcttattatt |
310 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||| | || |||||| | |
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| T |
42093510 |
tgagttgagaaatgtactgttttggttagttgtacttttaagcacttaagtgatttgatgattaagtaatcaacaaattgtgagatgtccttttattagt |
42093411 |
T |
|
| Q |
311 |
tgccttgtgtac-tttctgctaccaa----gttgggtattgaggaaatattatcatt |
362 |
Q |
| |
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|||||| ||||| ||||||||||||| |||||||||| |||||| ||||||||| |
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| T |
42093410 |
tgccttatgtacttttctgctaccaagttggttgggtattaaggaaaaattatcatt |
42093354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 31949744 - 31949887
Alignment:
| Q |
5 |
ggtgtcacaggagcagctaagaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaa |
104 |
Q |
| |
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|||||||| ||||||| || |||| |||||| ||||| ||||| ||||||||||||||| ||| |||||| ||||||||||| | ||||||| |||| |
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| T |
31949744 |
ggtgtcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatctataggcattggtgaaa |
31949843 |
T |
|
| Q |
105 |
atggtccatcttatcaatttaagcagtatttctagaagaattag |
148 |
Q |
| |
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||||||| ||||||| |||| ||||| ||||| ||||||||| |
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| T |
31949844 |
atggtccgtcttatcgatttgagcagcttttctgaaagaattag |
31949887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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