View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_51 (Length: 363)
Name: NF5418_low_51
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 33830923 - 33831244
Alignment:
| Q |
18 |
gtaagagggcaagggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccacccttggcct |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33830923 |
gtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccacccttggcct |
33831022 |
T |
|
| Q |
118 |
gtagcatcaaactgaaaccaacttgtagaagactgtgtcttcttc--ttcacagcagctaccatatcttgtgggtcc--atccctccaattcaactcaat |
213 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33831023 |
gtagcatcaaactgaatccaacttgtagaagactgtgtcttcttctattcacagcagctaccatatcttgtgggtccatatccctccaattcaactcaat |
33831122 |
T |
|
| Q |
214 |
aaaagaacccttaaacccttgcgtatggttaaggtacgtgactc---------tgtcttcttatttatatagtgaatgtgtgtaactgggaagaataaga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||||| |
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| T |
33831123 |
aaaagaacccttaaacccttgcgtatggttaaggtacgtgactcgtggagtgatagttatttatttatatagtgaatgtgtgt-actgggaagaataaga |
33831221 |
T |
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| Q |
305 |
ttgattttaagttgaagtttgtt |
327 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
33831222 |
ttgattttaagttgaagtttgtt |
33831244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 33893086 - 33893407
Alignment:
| Q |
18 |
gtaagagggcaagggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccacccttggcct |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33893086 |
gtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccacccttggcct |
33893185 |
T |
|
| Q |
118 |
gtagcatcaaactgaaaccaacttgtagaagactgtgtcttcttc--ttcacagcagctaccatatcttgtgggtcc--atccctccaattcaactcaat |
213 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33893186 |
gtagcatcaaactgaatccaacttgtagaagactgtgtcttcttctattcacagcagctaccatatcttgtgggtccatatccctccaattcaactcaat |
33893285 |
T |
|
| Q |
214 |
aaaagaacccttaaacccttgcgtatggttaaggtacgtgactc---------tgtcttcttatttatatagtgaatgtgtgtaactgggaagaataaga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||||| |
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| T |
33893286 |
aaaagaacccttaaacccttgcgtatggttaaggtacgtgactcgtggagtgatagttatttatttatatagtgaatgtgtgt-actgggaagaataaga |
33893384 |
T |
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| Q |
305 |
ttgattttaagttgaagtttgtt |
327 |
Q |
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||||||||||||||||||||||| |
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| T |
33893385 |
ttgattttaagttgaagtttgtt |
33893407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 33810748 - 33810898
Alignment:
| Q |
18 |
gtaagagggcaagggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccacccttggcct |
117 |
Q |
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|
||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| | | |||||||||| |
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| T |
33810748 |
gtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagacccttggcca |
33810847 |
T |
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| Q |
118 |
gtagcatcaaactgaaaccaacttgtagaagactgtgtcttcttcttcaca |
168 |
Q |
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||| ||||||| || ||| ||| |||||||||||||||||||||||||| |
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| T |
33810848 |
gtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcaca |
33810898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 33870217 - 33870367
Alignment:
| Q |
18 |
gtaagagggcaagggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccacccttggcct |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| | | |||||||||| |
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| T |
33870217 |
gtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagacccttggcca |
33870316 |
T |
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| Q |
118 |
gtagcatcaaactgaaaccaacttgtagaagactgtgtcttcttcttcaca |
168 |
Q |
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||| ||||||| || ||| ||| |||||||||||||||||||||||||| |
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| T |
33870317 |
gtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcaca |
33870367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 24408956 - 24408875
Alignment:
| Q |
18 |
gtaagagggcaagggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatca |
99 |
Q |
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||||||| |||||||||||||||||||||||||| |||||| ||| |||||||||| ||||||| ||||||||||||||||| |
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| T |
24408956 |
gtaagagagcaagggatcaaggattctaagatcatgtgcattaatctgaaccctatgcatgatagcatacttgtccacatca |
24408875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 24410129 - 24410210
Alignment:
| Q |
18 |
gtaagagggcaagggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatca |
99 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||| ||||||||||||||||| |
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| T |
24410129 |
gtaagagagcaagggatcaaggattctaagatcacatgcattaatctgaaccctatgcatgatagcatacttgtccacatca |
24410210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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