View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418_low_54 (Length: 358)

Name: NF5418_low_54
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418_low_54
NF5418_low_54
[»] chr5 (4 HSPs)
chr5 (1-348)||(5240666-5241013)
chr5 (4-100)||(7992173-7992269)
chr5 (19-100)||(28276947-28277028)
chr5 (1-100)||(10916888-10916987)
[»] chr4 (7 HSPs)
chr4 (4-100)||(49577347-49577443)
chr4 (4-98)||(4289866-4289960)
chr4 (4-100)||(2588276-2588372)
chr4 (4-100)||(16497495-16497591)
chr4 (4-100)||(5650526-5650622)
chr4 (4-99)||(39598895-39598990)
chr4 (4-66)||(16497720-16497782)
[»] chr3 (5 HSPs)
chr3 (1-100)||(7227297-7227396)
chr3 (4-100)||(53208471-53208567)
chr3 (4-100)||(7323064-7323160)
chr3 (4-98)||(32130384-32130478)
chr3 (16-84)||(9454856-9454924)
[»] chr8 (7 HSPs)
chr8 (4-100)||(3117931-3118027)
chr8 (4-100)||(1548365-1548461)
chr8 (16-98)||(3376117-3376199)
chr8 (7-100)||(29168293-29168386)
chr8 (4-100)||(20900994-20901090)
chr8 (4-100)||(23033603-23033699)
chr8 (16-100)||(34784284-34784368)
[»] chr6 (3 HSPs)
chr6 (4-100)||(13425484-13425580)
chr6 (1-87)||(18133701-18133787)
chr6 (1-100)||(23889828-23889927)
[»] chr2 (4 HSPs)
chr2 (4-100)||(44673389-44673485)
chr2 (1-99)||(36536168-36536266)
chr2 (4-100)||(25438517-25438613)
chr2 (1-101)||(42975641-42975741)
[»] chr7 (5 HSPs)
chr7 (1-100)||(36167514-36167613)
chr7 (4-100)||(12859011-12859107)
chr7 (4-100)||(19886793-19886889)
chr7 (4-100)||(32775392-32775488)
chr7 (4-48)||(5465526-5465570)
[»] chr1 (2 HSPs)
chr1 (19-100)||(47523910-47523991)
chr1 (25-82)||(33966877-33966934)
[»] scaffold0302 (1 HSPs)
scaffold0302 (6-100)||(17314-17408)
[»] scaffold0768 (1 HSPs)
scaffold0768 (23-88)||(4430-4494)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 5240666 - 5241013
Alignment:
Q  1 tttcctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5240666 tttcctctatttttactatctatttctctcaactctatcaacaacctactgatcctacttatgaaccatgttacatccctcgtgtttaaattctttcacc 5240765  T
Q  101 atctgacatattctatgtagggtcctgactacattgttggtaatacaagatatttttcaatttcatggatcgaatataaaccccattaaggtataaaaat 200  Q
    ||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5240766 atccgacagattctatgtagggtcccgactacattgttggtaatacaagatatttttcaatttcatggatcgaatataaaccccattaaagtataaaaat 5240865  T
Q  201 gactcggtgattagggataaaaaagttgaggaaagaagtaataagaatctcaaaattttaatgcaaattaacaatactaatattttacgtttcaaaaaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5240866 gactcggtgattagggataaaaaagttgaggaaagaagtaataagaatctcaaaattttaatgcaaattaacaatactaatattttacgtttcaaaaaca 5240965  T
Q  301 aataaacacattattttaaaacgacaatattcactacgtatatctctg 348  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  5240966 aataaacacattcttttaaaacgacaatattcactacgtatatctctg 5241013  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 7992269 - 7992173
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  |||| |||||||||||| ||||||| |||||||| ||||||||||| ||||  |||||| | |||||||||||  ||||||||||    
T  7992269 cctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacc 7992173  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 28276947 - 28277028
Alignment:
Q  19 tctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    |||||||||||| | ||||||| |||||||||||||||||||| ||||| |||||| | |||||| ||||  ||||||||||    
T  28276947 tctatttctctctattctatcaacaacctattgatcctacttacgaactgtgttacgttcctcgtatttacgttctttcacc 28277028  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 10916987 - 10916888
Alignment:
Q  1 tttcctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    |||||||||||||  |||| ||||||||||||||||||||  || |||| ||  |||||||| ||   |||||| | |||||||||||  ||||||||||    
T  10916987 tttcctctattttctctatatatttctctcaactctatcaataatctatcgactctacttataaaacgtgttacgttcctcgtgtttatgttctttcacc 10916888  T

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Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 49577443 - 49577347
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  ||||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||| | ||||||||||| |||||||||||    
T  49577443 cctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaactgtgttacgttcctcgtgtttacattctttcacc 49577347  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 4289960 - 4289866
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttca 98  Q
    ||||||||||  ||||||||||||||||||||||||| |||||||  ||||||||||| ||||   ||||| | |||||||||||| ||||||||    
T  4289960 cctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgggttacgttcctcgtgtttaagttctttca 4289866  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 2588372 - 2588276
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  |||| |||||||||||| ||||||| |||||||| ||||||||||| ||||  |||||| | |||||||||||  ||||||||||    
T  2588372 cctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacc 2588276  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 16497591 - 16497495
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  |||| |||||||||||| ||||||  |||||||| ||||||||||| ||||  |||||| | |||||||||||  ||||||||||    
T  16497591 cctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacc 16497495  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 5650622 - 5650526
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  |||| |||||||||||| ||||||  || ||||| ||||||||||| ||||  |||||| | |||||||||||  ||||||||||    
T  5650622 cctctattttccctatatatttctctcaattctatcgacagcctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacc 5650526  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 39598990 - 39598895
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcac 99  Q
    ||||||||||  ||||||||||| ||||||||| ||| |||||||  ||||||||||| ||||  || ||| | |||||||||||  |||||||||    
T  39598990 cctctattttctctatctatttcgctcaactctgtcaacaacctaccgatcctacttacgaacagtgctacgttcctcgtgtttacgttctttcac 39598895  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 16497782 - 16497720
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaac 66  Q
    ||||||||||  |||| |||||||||||| ||||||  |||||||| ||||||||||| ||||    
T  16497782 cctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaac 16497720  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 7227297 - 7227396
Alignment:
Q  1 tttcctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||||  ||||||| ||| ||||  || ||||| |||||||||||  ||||||||||    
T  7227297 tttcctctattttctctatctatttctctcaactctatcaacaacctaccgatcctaattacgaaccgtggtacattcctcgtgtttacgttctttcacc 7227396  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 53208567 - 53208471
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  |||| |||||||||||| ||||||  |||||||| ||||||||||||||||  |||||| | |||||||||||  ||||||||||    
T  53208567 cctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttatgaaccgtgttacgttcctcgtgtttacgttctttcacc 53208471  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 7323064 - 7323160
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  |||| |||||||||||| ||||||  |||||||| ||||||||||| ||||  |||||| | |||||||||||  ||||||||||    
T  7323064 cctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacc 7323160  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 32130384 - 32130478
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttca 98  Q
    ||||||||||  |||| |||||||||||| ||||||  |||||||| ||||||||||| ||||  |||||| | |||||||||||  ||||||||    
T  32130384 cctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttca 32130478  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 9454856 - 9454924
Alignment:
Q  16 ctatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtg 84  Q
    |||| |||||||||||| ||||||| |||||||  ||||||||||| ||||  |||||||  |||||||    
T  9454856 ctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtg 9454924  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 3117931 - 3118027
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  |||| |||||||||||| ||||||  |||||||| ||||||||||| |||| ||||||| | |||||||||||  ||||||||||    
T  3117931 cctctattttccctatatatttctctcaattctatctacaacctatcgatcctacttacgaaccatgttacgttcctcgtgtttacgttctttcacc 3118027  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 1548365 - 1548461
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  ||||  ||||||||||| ||||||| |||||||| ||||||||||| ||||  |||||| | |||||||||||  ||||||||||    
T  1548365 cctctattttccctatacatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacc 1548461  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 3376199 - 3376117
Alignment:
Q  16 ctatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttca 98  Q
    |||||||||| |||||||||||||| |||||||  ||||||||||| ||||  |||||| | |||||||||||  ||||||||    
T  3376199 ctatctatttatctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttca 3376117  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 29168386 - 29168293
Alignment:
Q  7 ctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    |||||||  |||||||| |||||||||||||||| |||||||  ||||||||||| ||||  |||||| | |||| ||||||  ||||||||||    
T  29168386 ctattttctctatctatctctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttcctcatgtttacgttctttcacc 29168293  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 20900994 - 20901090
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  || | |||||||||||| ||||||  |||||||||||||| ||||| ||||  |||||| | |||||||||||  ||||||||||    
T  20900994 cctctattttccctgtatatttctctcaattctatcgacaacctattgatcccacttacgaaccgtgttacgttcctcgtgtttacgttctttcacc 20901090  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 23033603 - 23033699
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  |||| |||||||||||| |||||   |||||||| ||||||||||| ||||  |||||| | |||||||||||  ||||||||||    
T  23033603 cctctattttccctatatatttctctcaattctattgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacc 23033699  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 34784368 - 34784284
Alignment:
Q  16 ctatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    |||| |||||||||||| ||||||  |||||||  |||||||||||  |||  |||||| | |||||||||||  ||||||||||    
T  34784368 ctatatatttctctcaattctatcgacaacctaacgatcctacttacaaaccgtgttacgttcctcgtgtttatgttctttcacc 34784284  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 13425580 - 13425484
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  |||| |||||||||||| ||||||| |||||||| ||||||||||| ||||  |||||| | |||||||||||  ||||||||||    
T  13425580 cctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacc 13425484  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 18133787 - 18133701
Alignment:
Q  1 tttcctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgttt 87  Q
    |||||||||||||  |||| ||||||| ||||||||||||  ||||||  ||||||||||||||||  |||||| | ||||||||||    
T  18133787 tttcctctattttctctatttatttctgtcaactctatcaaaaacctaccgatcctacttatgaaccgtgttacgttcctcgtgttt 18133701  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 23889927 - 23889828
Alignment:
Q  1 tttcctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    |||||||||||||  |||| ||||||| ||||||||||||  ||||||  ||||||||| | ||||  |||||| | ||||||||||   ||||||||||    
T  23889927 tttcctctattttctctatttatttctgtcaactctatcaaaaacctaccgatcctactaacgaaccgtgttacgttcctcgtgttttcgttctttcacc 23889828  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 44673389 - 44673485
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  |||| |||||||||||| ||||||| |||||||| ||||||||||| ||||  |||||| | |||||||||||  ||||||||||    
T  44673389 cctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacc 44673485  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 36536266 - 36536168
Alignment:
Q  1 tttcctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcac 99  Q
    |||||||||||||  ||||||||| ||||||||||||||| |||||||  |||||||||||  |||  |||||| | ||| |||||||  |||||||||    
T  36536266 tttcctctattttctctatctattcctctcaactctatcaacaacctaccgatcctacttacaaaccgtgttacgtgccttgtgtttactttctttcac 36536168  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 25438517 - 25438613
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  |||| |||||||||||  | ||||  |||||||| ||||||||||| ||||  |||||| | |||||||||||  ||||||||||    
T  25438517 cctctattttccctatatatttctctcacttatatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacc 25438613  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 42975741 - 42975641
Alignment:
Q  1 tttcctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    |||||||||||||  || | | |||||||||||||||||| |||||||  |||||||||||| ||   ||||||  |||||||||||| | ||||| |||    
T  42975741 tttcctctattttctctgtttttttctctcaactctatcaacaacctaccgatcctacttataaatcgtgttacgaccctcgtgtttacaatcttttacc 42975642  T
Q  101 a 101  Q
    |    
T  42975641 a 42975641  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 36167613 - 36167514
Alignment:
Q  1 tttcctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    |||||||||||||  |||| |||||||||||| ||||||  ||||||||  |||||||||| ||||  |||||| | ||||||||||| |||||||||||    
T  36167613 tttcctctattttccctatatatttctctcaattctatcgacaacctatcaatcctacttacgaaccgtgttacgttcctcgtgtttacattctttcacc 36167514  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 12859107 - 12859011
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  |||| |||||||||||| ||||||| |||||||| ||||||||||| ||||  |||||| | |||| ||||||  ||||||||||    
T  12859107 cctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcatgtttacgttctttcacc 12859011  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 19886793 - 19886889
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  |||| |||||||||||| ||||||  |||||||| ||||||||||| ||||  |||||| | |||||||||||  ||||||||||    
T  19886793 cctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacc 19886889  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 32775392 - 32775488
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||||  |||| |||||||||||| ||||||  |||||||| ||||||||||| ||||  |||||| | |||||||||||  ||||||||||    
T  32775392 cctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacc 32775488  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 5465570 - 5465526
Alignment:
Q  4 cctctatttttactatctatttctctcaactctatcagcaaccta 48  Q
    |||||||||| |||||||||||||||||||||||||| |||||||    
T  5465570 cctctattttcactatctatttctctcaactctatcaacaaccta 5465526  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 47523910 - 47523991
Alignment:
Q  19 tctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    |||||||||||||||||||||| |||||||  ||||||||||| ||||  |||||| | ||| |||||||  ||||||||||    
T  47523910 tctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcacc 47523991  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 33966877 - 33966934
Alignment:
Q  25 tctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcg 82  Q
    ||||||||||||||||  ||||||  ||||||||||| ||||| |||||||| |||||    
T  33966877 tctctcaactctatcaataacctaccgatcctacttacgaactgtgttacattcctcg 33966934  T

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Target: scaffold0302 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 17314 - 17408
Alignment:
Q  6 tctatttttactatctatttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgtttaaattctttcacc 100  Q
    ||||||||  || |||||||||||||||||||||| |||  ||| | ||||||||| ||||  |||||| | |||||||||||  ||||||||||    
T  17314 tctattttctctgtctatttctctcaactctatcaacaaagtatcgctcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacc 17408  T

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Target: scaffold0768 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 4430 - 4494
Alignment:
Q  23 tttctctcaactctatcagcaacctattgatcctacttatgaactatgttacatccctcgtgttta 88  Q
    |||||||||||||||||| || ||||| ||||||||||| ||||| ||||||  ||||||||||||    
T  4430 tttctctcaactctatcaaca-cctatcgatcctacttacgaactgtgttacgaccctcgtgttta 4494  T

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