View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_55 (Length: 358)
Name: NF5418_low_55
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 342
Target Start/End: Complemental strand, 5885338 - 5885007
Alignment:
| Q |
14 |
agagggctaacgtccattaccaatggcataaggttatttattgtgataacttctcctagtgcagaactatcttttatgtttgatttttaataagttaatt |
113 |
Q |
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| T |
5885338 |
agagggctaacgtccattaccaatggcataaggttatttattgtgataacttctcccagtgcagaactatcttttatgttttatttttaataagttaatt |
5885239 |
T |
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| Q |
114 |
tataccaatcatttgaacaattgattttaatgcagtgttatcgaatatcagccatggcggcaccatagcaagaccaaataaattaaactatgagatgagg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5885238 |
tataccaatcatttgaacaattgattttaatgcagtgttatcgaatatcagccatggcggcaccatagcaagaccaaataaattaaactatgagacgagg |
5885139 |
T |
|
| Q |
214 |
atgtacnnnnnnnngatagggatcctgtaaacttattatttgataagga---tgtataaaaacggttttttgttgaagattatgtttaccgtatttggat |
310 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5885138 |
atgtacaaaaaaaagatagggatcctgtaaacttattatttgataaggatattgtataaaaatggttttttgttgaagattatgtttaccgtatttggat |
5885039 |
T |
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| Q |
311 |
aaacagcttatttaaactcttatagcacaaac |
342 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5885038 |
aaacagcttatttaaactcttatagcacaaac |
5885007 |
T |
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