View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_57 (Length: 348)
Name: NF5418_low_57
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_57 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 348
Target Start/End: Complemental strand, 35658499 - 35658161
Alignment:
| Q |
10 |
attatactacctccaattctacatatacgaaaatgtcgagtcgacaaaaaatgatgaatttgggctagaaattggcccaaatacataaacttgtgtagag |
109 |
Q |
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| T |
35658499 |
attatactacctccaattctacatatacgaaaatgtcgagtcgacaaaaaatgatgaatttgggctagaaattggcccaaatgcataaacttgtgttgac |
35658400 |
T |
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| Q |
110 |
ccaacattttcttatatatatagaactaaagggagtattaattnnnnnnngcattcagtcatgcttttattgaatgtaaatgtagtgtgcatgtttggaa |
209 |
Q |
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| T |
35658399 |
ccaacattttcttatatatatagaactaaagggagtattaattaaaaaaagcattcagtcatgcttttatttaatgtaaatgtggtgtgcatgtttggaa |
35658300 |
T |
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| Q |
210 |
taacttccttcgatggattgaactgtatcaattatcatacgtggaaaacgattattggtgtgatactctgatgtattcctaaattacgttgttgcgagtt |
309 |
Q |
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| T |
35658299 |
taacttccttcgatggattgaactgtatcaattatcatacgtggaaaacgattattggtgtgatactctgatgtattcctaaattacgttgttgcgagtt |
35658200 |
T |
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| Q |
310 |
ttgattgtttatatctaaaccaatattatggccttcatt |
348 |
Q |
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| T |
35658199 |
ttgtttgtttatatctaaaccaatattatggccttcatt |
35658161 |
T |
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