View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418_low_62 (Length: 326)

Name: NF5418_low_62
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418_low_62
NF5418_low_62
[»] chr2 (2 HSPs)
chr2 (166-306)||(17680332-17680472)
chr2 (13-82)||(17680558-17680631)
[»] chr6 (2 HSPs)
chr6 (166-306)||(10191640-10191780)
chr6 (13-82)||(10191481-10191554)
[»] scaffold0287 (1 HSPs)
scaffold0287 (174-296)||(12377-12499)
[»] chr7 (3 HSPs)
chr7 (174-296)||(3633586-3633708)
chr7 (176-278)||(4109291-4109393)
chr7 (176-241)||(26820893-26820958)
[»] chr8 (2 HSPs)
chr8 (203-284)||(21586832-21586913)
chr8 (174-294)||(40261934-40262055)
[»] chr4 (3 HSPs)
chr4 (175-284)||(42727611-42727720)
chr4 (202-284)||(283947-284029)
chr4 (174-284)||(52541533-52541643)
[»] chr3 (1 HSPs)
chr3 (185-284)||(37836201-37836300)
[»] scaffold0377 (1 HSPs)
scaffold0377 (176-208)||(13092-13124)
[»] chr5 (1 HSPs)
chr5 (174-241)||(3008910-3008977)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 166 - 306
Target Start/End: Complemental strand, 17680472 - 17680332
Alignment:
Q  166 attaaacatgtattaattcaaattctttcatttttggtctttgttgagatttaaccattgaaaaacacttatgtgtcatattaaatagacaaaatacatg 265  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||    
T  17680472 attaaacctgtattaattcagattctttcatttttggtctttgttgagatttaaccattgaaaaacacttatgtgtcatattgagttgacaaaatacatg 17680373  T
Q  266 cttattagacatttttaaaaatgtggtgtttcgttaattga 306  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17680372 cttattagacatttttaaaaatgtggtgtttcgttaattga 17680332  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 17680631 - 17680558
Alignment:
Q  13 aatatacaaatgttgatgtgttcttctatttggtaaa----atgtattcttattagaaaaattaaaatgatgtg 82  Q
    |||| ||||||||||||||||||||||||||||||||    ||| ||||||||||||||  |||||||||||||    
T  17680631 aatagacaaatgttgatgtgttcttctatttggtaaaatgcatgcattcttattagaaattttaaaatgatgtg 17680558  T

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Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 166 - 306
Target Start/End: Original strand, 10191640 - 10191780
Alignment:
Q  166 attaaacatgtattaattcaaattctttcatttttggtctttgttgagatttaaccattgaaaaacacttatgtgtcatattaaatagacaaaatacatg 265  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||    
T  10191640 attaaacctgtattgattcaaattctttcatttttggtctttgttgagatttaaccattgaagaacacttatgtgtcatattaagttaacaaaatacatg 10191739  T
Q  266 cttattagacatttttaaaaatgtggtgtttcgttaattga 306  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10191740 cttattagacatttttaaaaatgtggtgtttcgttaattga 10191780  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 10191481 - 10191554
Alignment:
Q  13 aatatacaaatgttgatgtgttcttctatttggtaaa----atgtattcttattagaaaaattaaaatgatgtg 82  Q
    |||| ||||||||||||||||||||||||||||||||    ||| ||||||||||||||  |||||||||||||    
T  10191481 aatagacaaatgttgatgtgttcttctatttggtaaaatgcatgcattcttattagaaattttaaaatgatgtg 10191554  T

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Target: scaffold0287 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 296
Target Start/End: Original strand, 12377 - 12499
Alignment:
Q  174 tgtattaattcaaattctttcatttttggtctttgttgagatttaaccattgaaaaacacttatgtgtcatattaaatagacaaaatacatgcttattag 273  Q
    ||||||| ||||||||||||||||||||||||||  | |||||||| | |  |||||||||||||||| || |  | | | | ||||| ||| |||||||    
T  12377 tgtattatttcaaattctttcatttttggtcttttgtaagatttaatcttgaaaaaacacttatgtgttatgtcgagttg-ccaaatatatgtttattag 12475  T
Q  274 acatttttaaa-aatgtggtgttt 296  Q
    ||||||||||| ||||||||||||    
T  12476 acatttttaaataatgtggtgttt 12499  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 296
Target Start/End: Complemental strand, 3633708 - 3633586
Alignment:
Q  174 tgtattaattcaaattctttcatttttggtctttgttgagatttaaccattgaaaaacacttatgtgtcatattaaatagacaaaatacatgcttattag 273  Q
    ||||||| ||||||||||||||||||||||||||  | |||||||| | |  |||||||||||||||| || |  | | | | ||||| ||| |||||||    
T  3633708 tgtattatttcaaattctttcatttttggtcttttgtaagatttaatcttgaaaaaacacttatgtgttatgtcgagttg-ccaaatatatgtttattag 3633610  T
Q  274 acatttttaaa-aatgtggtgttt 296  Q
    ||||||||||| ||||||||||||    
T  3633609 acatttttaaataatgtggtgttt 3633586  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 4109393 - 4109291
Alignment:
Q  176 tattaattcaaattctttcatttttggtctttgttgagatttaaccattgaaaaacacttatgtgtcatattaaatagacaaaatacatgcttattagac 275  Q
    ||||| ||||| ||| || |||||| ||||||| |  ||||||||||| ||||||| ||| ||| | ||| | | | |||||||| ||||||||||||||    
T  4109393 tattatttcaatttccttaattttttgtctttggttggatttaaccatagaaaaactcttttgttttatactgagttgacaaaatccatgcttattagac 4109294  T
Q  276 att 278  Q
    |||    
T  4109293 att 4109291  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 26820958 - 26820893
Alignment:
Q  176 tattaattcaaattctttcatttttggtctttgttgagatttaaccattgaaaaacacttatgtgt 241  Q
    ||||||||| ||||| ||  || ||| | |||| |||||||||||||| |||||||||||||||||    
T  26820958 tattaattccaattccttatttcttgatttttggtgagatttaaccatggaaaaacacttatgtgt 26820893  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 21586913 - 21586832
Alignment:
Q  203 tctttgttgagatttaaccattgaaaaacacttatgtgtcatattaaatagacaaaatacatgcttattagacatttttaaa 284  Q
    |||||| |||||||||||||| ||||||| || |||||| ||  |||||  ||||||| | ||||||||||| |||||||||    
T  21586913 tctttggtgagatttaaccatagaaaaactctaatgtgttatgctaaattaacaaaatgcgtgcttattagaaatttttaaa 21586832  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 294
Target Start/End: Original strand, 40261934 - 40262055
Alignment:
Q  174 tgtattaattcaaattctttcatttttggtctttgttgagatttaaccattgaaaaacacttatgtgtcatattaaatagacaaaatacatgcttattag 273  Q
    ||||||| |||||||||||| |||||||||||||| |  ||||||||| | ||||| ||||| | ||| ||  ||| | |||||  |||||| ||||||     
T  40261934 tgtattatttcaaattcttttatttttggtctttggtaggatttaaccttggaaaagcacttttatgttatgctaagttgacaacctacatgtttattat 40262033  T
Q  274 acatttttaaa-aatgtggtgt 294  Q
    || |||||||| ||||||||||    
T  40262034 acgtttttaaacaatgtggtgt 40262055  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 42727720 - 42727611
Alignment:
Q  175 gtattaattcaaattctttcatttttggtctttgttgagatttaaccattgaaaaacacttatgtgtcatattaaatagacaaaatacatgcttattaga 274  Q
    |||||| ||||||||| || | |||| ||||||| |||||||||| |||  ||||||||| |||||  ||  ||| | |||||||||  ||||||||| |    
T  42727720 gtattatttcaaattcctttaattttagtctttggtgagatttaatcataaaaaaacactgatgtgctatgctaagtcgacaaaataagtgcttattata 42727621  T
Q  275 catttttaaa 284  Q
    ||||||||||    
T  42727620 catttttaaa 42727611  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 283947 - 284029
Alignment:
Q  202 gtctttgttgagatttaaccattgaaaaacacttatgtgtcatattaaatagacaaaatacatgcttattagacatttttaaa 284  Q
    ||||||| |||||||||||||| ||||||| || |||||| || || |||  | ||||| | ||||||||||| |||||||||    
T  283947 gtctttggtgagatttaaccatagaaaaactctaatgtgttatgttgaattaaaaaaatgcgtgcttattagaaatttttaaa 284029  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 52541643 - 52541533
Alignment:
Q  174 tgtattaattcaaattctttcatttttggtctttgttgagatttaaccattgaaaaacacttatgtgtcatattaaatagacaaaatacatgcttattag 273  Q
    ||||||| |||||||||||| |||||||||||||| |  ||||||||| | ||||| ||||| | ||| ||  ||| | |||||  |||||| ||||||     
T  52541643 tgtattatttcaaattcttttatttttggtctttggtaggatttaaccttggaaaagcacttttatgttatgctaagttgacaacctacatgtttattat 52541544  T
Q  274 acatttttaaa 284  Q
    || ||||||||    
T  52541543 acgtttttaaa 52541533  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 284
Target Start/End: Complemental strand, 37836300 - 37836201
Alignment:
Q  185 aaattctttcatttttggtctttgttgagatttaaccattgaaaaacacttatgtgtcatattaaatagacaaaatacatgcttattagacatttttaaa 284  Q
    |||||| |||| ||||| |||||| ||||||||| |||| |||||||  | || ||| || || | | ||||||||||||| ||||||||||| ||||||    
T  37836300 aaattccttcacttttgatctttggtgagatttagccatagaaaaactatgatttgttatgttgagttgacaaaatacatgtttattagacatgtttaaa 37836201  T

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Target: scaffold0377 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 13124 - 13092
Alignment:
Q  176 tattaattcaaattctttcatttttggtctttg 208  Q
    ||||| |||||||||||||||||||||||||||    
T  13124 tattatttcaaattctttcatttttggtctttg 13092  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 3008977 - 3008910
Alignment:
Q  174 tgtattaattcaaattctttcatttttggtcttt-gttgagatttaaccattgaaaaacacttatgtgt 241  Q
    ||||||| |||||||||||| ||||||||||||| |||| || |||||| | |||||||| ||||||||    
T  3008977 tgtattatttcaaattcttttatttttggtctttagttg-gagttaaccttggaaaaacatttatgtgt 3008910  T

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