View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_66 (Length: 311)
Name: NF5418_low_66
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 3 - 294
Target Start/End: Complemental strand, 49298934 - 49298643
Alignment:
| Q |
3 |
atcaagatgttaagtcgggtatttatctcagccgattaaaaccatgttattttaggtttgttgaagtatgttttaacaagttttacatactcaaaatagg |
102 |
Q |
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| T |
49298934 |
atcaagatgttaagtcgggtatttatctcagccgattaaaaccatgttattttaggtttgttgaagtatgttttaagaagttttacatactcaaaatagg |
49298835 |
T |
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| Q |
103 |
cttaattaaaaagccttagaaccatatcaaaatcaagtttttgatctagtgttatttactaatatcttttccagtataagtcatacgtcatttggaacag |
202 |
Q |
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| T |
49298834 |
cttaattaaaaagccttagaaccatatcaaaatcaagtttttgatctagtgttatttactaatatcttttccattataagtcatacgtcattcggaacag |
49298735 |
T |
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| Q |
203 |
acagtgttggaggcaaagtctccatctaagtacacgagcacgaggtgcccatattctttatcttcgtttgattaagaattcactccacttgt |
294 |
Q |
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| T |
49298734 |
acagtgttggaggcaaagtctccatctaagtacacgagcacgaggtgcccatattctttatcttcgtttgattaagaattccctccacttgt |
49298643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 49305673 - 49305628
Alignment:
| Q |
251 |
ccatattctttatcttcgtttgattaagaattc--actccacttgt |
294 |
Q |
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| T |
49305673 |
ccatattctttatcttcgtttgattaagaattcatactccacttgt |
49305628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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