View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5418_low_7 (Length: 633)
Name: NF5418_low_7
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 140 - 592
Target Start/End: Complemental strand, 32857448 - 32856990
Alignment:
| Q |
140 |
tattagatacatcacttatacgagaaacttaaaaaattaattgtttcttataatcaagagcggaaggaaggagtaatagattccaccaatactctt-gac |
238 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| | | |||| |||||||||||||||||||||||||| ||| |
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| T |
32857448 |
tattaaatacatcacttatacgagaaacttaaaaaattaattatttcttataatcaaaacagc--ggaaagagtaatagattccaccaatactctttgac |
32857351 |
T |
|
| Q |
239 |
cctaacaacaaagttaaattcacactcttggggagtatatgcagtagcacattagaagttgaccaacgcgtttcacaaaaattaaactc------acatt |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32857350 |
cctaacaacaaagttaaattcacactcttggggagtatatgcagcagcacattagaagttgaccaacgcgtttcacaaaaattaaactttattttacatt |
32857251 |
T |
|
| Q |
333 |
agtttttagaaacattaatatatttccttnnnnnnnnn-catttaatatatttgacccaataatgtgattactctacgataataggacaaaactaatctt |
431 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32857250 |
agtttttagaaacattaatatatttccttaaaaaaaaaacatttaatatatttgacccaataatgtgattactctacgataataggacaaaactaatctt |
32857151 |
T |
|
| Q |
432 |
ccaaccgacatcacgagtgcaaacttaactatcaaaactttttggccagtttaatacctgctagtggattgacttggattgtcacaattcaatgccatat |
531 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32857150 |
ccaaccgacatcacgagtgcaaacttaactatcataactttttggccagtttaatacctgctagtggattgacttggattgtcactattcaatgccatat |
32857051 |
T |
|
| Q |
532 |
ttgaccctataaaggaagcataaataaataattcagatatgaataaaatagactatattta |
592 |
Q |
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| T |
32857050 |
ttgaccctataaaggaagcataaataaataattcagatatgaataaaatagactatattta |
32856990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 32857607 - 32857524
Alignment:
| Q |
1 |
gttgcatgtagtttcacctataatttgagacgaagcgattaagttataaatgcttctaaaaaaccttagtctgtcctatttaac |
84 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||||||| |
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|
| T |
32857607 |
gttgcatgtagtttcacctataatttgagacgaagggattaagttataaatgcttttaaaaaatcttagtctgacctatttaac |
32857524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 452 - 545
Target Start/End: Complemental strand, 32859195 - 32859100
Alignment:
| Q |
452 |
aaacttaactatcaaaactttttggccagtttaatacctgctagtggattgact----tggattgtcacaattcaatgccatatttgaccctataaag |
545 |
Q |
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| T |
32859195 |
aaacttaactatcaaaa--ttttagccaataaaatacctgctagtggattgattgacctggatcatcacaattcaatgccatatttgaccctataaag |
32859100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 39413908 - 39413960
Alignment:
| Q |
141 |
attagatacatcacttatacgagaaacttaaaaaattaattgtttcttataat |
193 |
Q |
| |
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|||||||||||||||||||| | |||||||||||| |||||||||||||||| |
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|
| T |
39413908 |
attagatacatcacttatacaatgaacttaaaaaatcaattgtttcttataat |
39413960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 576 - 617
Target Start/End: Complemental strand, 32856851 - 32856810
Alignment:
| Q |
576 |
aaaatagactatatttaatctaaagttcaatcagcaaaaaat |
617 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||| |
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| T |
32856851 |
aaaacagactatatttaatctaaagttcaatcaacaaaaaat |
32856810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 37006520 - 37006472
Alignment:
| Q |
145 |
gatacatcacttatacgagaaacttaaaaaattaattgtttcttataat |
193 |
Q |
| |
|
|||||||||||||||| | ||||| ||||| | |||||||||||||||| |
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|
| T |
37006520 |
gatacatcacttatacaataaactaaaaaagtcaattgtttcttataat |
37006472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 41395728 - 41395664
Alignment:
| Q |
143 |
tagatacatcacttatacgagaaacttaaaaaattaattgtttcttataatcaagagcggaagga |
207 |
Q |
| |
|
|||||||||||||||||| | || | ||||| |||||||||||||||||| | || |||||||| |
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|
| T |
41395728 |
tagatacatcacttatacaatgaattaaaaaagttaattgtttcttataataaggatcggaagga |
41395664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 53284398 - 53284448
Alignment:
| Q |
143 |
tagatacatcacttatacgagaaacttaaaaaattaattgtttcttataat |
193 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||| |||||||||||||||| |
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|
| T |
53284398 |
tagatacatcacttatacaataaaccaaaaaaatcaattgtttcttataat |
53284448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 35583963 - 35584015
Alignment:
| Q |
141 |
attagatacatcacttatacgagaaacttaaaaaattaattgtttcttataat |
193 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||| |||||||||||||||||| |
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|
| T |
35583963 |
attagatacatcacttatacaatgaaccaaaaaagttaattgtttcttataat |
35584015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 43141834 - 43141782
Alignment:
| Q |
141 |
attagatacatcacttatacgagaaacttaaaaaattaattgtttcttataat |
193 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||| |||||||||||||||||| |
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| T |
43141834 |
attagatacatcacttatacaatgaaccaaaaaagttaattgtttcttataat |
43141782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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