View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418_low_70 (Length: 291)

Name: NF5418_low_70
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418_low_70
NF5418_low_70
[»] chr8 (8 HSPs)
chr8 (18-277)||(26592091-26592347)
chr8 (37-250)||(25865642-25865855)
chr8 (37-250)||(41943886-41944099)
chr8 (121-224)||(43479673-43479776)
chr8 (22-224)||(38799422-38799624)
chr8 (22-224)||(38821893-38822095)
chr8 (124-221)||(44343984-44344081)
chr8 (172-224)||(38807073-38807125)
[»] chr4 (4 HSPs)
chr4 (18-260)||(34748678-34748920)
chr4 (22-218)||(24860473-24860669)
chr4 (119-248)||(40045368-40045497)
chr4 (139-250)||(40036080-40036191)
[»] chr7 (2 HSPs)
chr7 (34-224)||(21317513-21317703)
chr7 (19-224)||(3929960-3930165)
[»] chr5 (4 HSPs)
chr5 (37-225)||(12546997-12547185)
chr5 (37-218)||(12531434-12531615)
chr5 (139-212)||(9866668-9866741)
chr5 (136-216)||(9870022-9870102)
[»] chr2 (5 HSPs)
chr2 (55-224)||(13576308-13576477)
chr2 (34-250)||(34571419-34571635)
chr2 (18-83)||(34579054-34579119)
chr2 (18-83)||(34584803-34584868)
chr2 (124-239)||(34562636-34562751)
[»] scaffold0197 (1 HSPs)
scaffold0197 (43-224)||(30959-31140)
[»] chr1 (3 HSPs)
chr1 (124-250)||(7594104-7594230)
chr1 (34-81)||(18492747-18492794)
chr1 (31-81)||(7594401-7594451)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 26592091 - 26592347
Alignment:
Q  18 cgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26592091 cgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcaggatttcaagacggatctccgttttcagagctctgctgtgtcggcg 26592190  T
Q  118 ctgcaagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26592191 ctgcaagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatattc 26592290  T
Q  218 agcttgctaggcgtatccgtggcgagcgtgcttgatcttgttgttgttcgtgagttgtga 277  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  26592291 agcttgctaggcgtatccgtggcgagcgtgcttgatc---ttgttgttcgtgagttgtga 26592347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 250
Target Start/End: Original strand, 25865642 - 25865855
Alignment:
Q  37 cttcctttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggagg 136  Q
    ||||| |||||||||||||||||||| |||||||| |||||||| ||||||||  | ||||||||   ||||||    || || || ||||| || ||||    
T  25865642 cttccattccagcgtcttgttcgtgaaattgctcaggatttcaaaacggatctgagatttcagagtcatgctgttcttgcacttcaggaagctgctgagg 25865741  T
Q  137 cttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccg 236  Q
    |||||||||| ||||||||||||||||||||  | || || || ||||||||| | || || || ||||| |||||||||||||||||| | ||||| ||    
T  25865742 cttatcttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattcagcttgctcgtcgtattcg 25865841  T
Q  237 tggcgagcgtgctt 250  Q
    ||| || |||||||    
T  25865842 tggtgaacgtgctt 25865855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 250
Target Start/End: Original strand, 41943886 - 41944099
Alignment:
Q  37 cttcctttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggagg 136  Q
    ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| | || ||||||  ||||||    || || || ||||| || || |    
T  41943886 cttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaag 41943985  T
Q  137 cttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccg 236  Q
    ||||||| |||||||||||||||||||| ||  | || || || ||||||||| | ||||| || ||||| ||||| ||||| |||||  | ||||| ||    
T  41943986 cttatctggttggattgtttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaacttgcacgccgtattcg 41944085  T
Q  237 tggcgagcgtgctt 250  Q
    ||| || |||||||    
T  41944086 tggtgaacgtgctt 41944099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 43479776 - 43479673
Alignment:
Q  121 caagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagc 220  Q
    |||||||| || || |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||| | ||||| || ||||||||||||||||| |    
T  43479776 caagaagccgctgaagcttatcttgttggtttgtttgaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattcaac 43479677  T
Q  221 ttgc 224  Q
    ||||    
T  43479676 ttgc 43479673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 38799422 - 38799624
Alignment:
Q  22 cttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgc 121  Q
    |||||||| || |||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||  | || ||||||   || || || || || |    
T  38799422 cttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttc 38799521  T
Q  122 aagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagct 221  Q
    ||||||| || || |||||  | |||||  | ||||| || || ||||| || || || ||||||||| | ||||| |||||||||||||| ||||||||    
T  38799522 aagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagct 38799621  T
Q  222 tgc 224  Q
    |||    
T  38799622 tgc 38799624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 38822095 - 38821893
Alignment:
Q  22 cttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgc 121  Q
    |||||||| || |||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||  | || ||||||   || || || || || |    
T  38822095 cttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttc 38821996  T
Q  122 aagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagct 221  Q
    ||||||| || || |||||  | |||||  | ||||| || || ||||| || || || ||||||||| | ||||| |||||||||||||| ||||||||    
T  38821995 aagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagct 38821896  T
Q  222 tgc 224  Q
    |||    
T  38821895 tgc 38821893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 44343984 - 44344081
Alignment:
Q  124 gaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagct 221  Q
    ||||| || ||||||||||| || ||||||||||||||||| ||  | || ||||| ||||||||| | || || || ||||| ||||||||||||||    
T  44343984 gaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattcagct 44344081  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 38807073 - 38807125
Alignment:
Q  172 tgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 224  Q
    ||||| || ||||||||| | |||||||||||||||||||| ||||| |||||    
T  38807073 tgcgcaattcatgctaagagagttactatcatgcctaaggacattcaacttgc 38807125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 34748678 - 34748920
Alignment:
Q  18 cgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcg 117  Q
    |||||| ||||| |||||||| || ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||| || |||||||||    
T  34748678 cgaactcctcatccgcaaactccccttccagcgtctggttcgtgagatcgctcaggatttcaagactgatctccgtttccagagctccgccgtgtcggcg 34748777  T
Q  118 ctgcaagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattc 217  Q
    |||||||||||||| ||||||||||| |||||  | |||||||||||||||||||| || || ||||| |||||||| |||||||||||||||||||| |    
T  34748778 ctgcaagaagcggctgaggcttatctcgttggtctctttgaggatactaacctctgtgccattcatgccaagcgtgtcactatcatgcctaaggatatcc 34748877  T
Q  218 agcttgctaggcgtatccgtggcgagcgtgcttgatcttgttg 260  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  34748878 agctcgctaggcgtatccgtggcgagcgtgcttgatcttgttg 34748920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 24860473 - 24860669
Alignment:
Q  22 cttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgc 121  Q
    |||||||| || |||||||| ||||| ||||| |||||||| || |||||||||||||| || ||||||||||| |||||    ||||| || || || |    
T  24860473 cttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttc 24860572  T
Q  122 aagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattca 218  Q
    ||||||| || || |||||||| |||||| | ||||| ||||| || || |||||||| ||||||||| | ||||| || ||||| |||||||||||    
T  24860573 aagaagctgctgaagcttatctcgttggactctttgaagatacaaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattca 24860669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 119 - 248
Target Start/End: Original strand, 40045368 - 40045497
Alignment:
Q  119 tgcaagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattca 218  Q
    ||||||| || || ||||| |||||||||||  | |||||||| |||||| | |||||||||||||| ||||| |||||||| ||||| ||||| || ||    
T  40045368 tgcaagaggctgctgaggcatatcttgttggtctctttgaggacactaacttgtgcgctatccatgccaagcgagttactattatgcccaaggacatcca 40045467  T
Q  219 gcttgctaggcgtatccgtggcgagcgtgc 248  Q
    | | || ||| | |||||||||||||||||    
T  40045468 gttggcaaggaggatccgtggcgagcgtgc 40045497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 40036080 - 40036191
Alignment:
Q  139 tatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtg 238  Q
    |||||||||||  | |||||||| |||||| | || ||||||||||| ||||| |||||||| ||||| ||||| || ||| | || ||| | |||||||    
T  40036080 tatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaaggacatccagttggcaaggaggatccgtg 40036179  T
Q  239 gcgagcgtgctt 250  Q
    | ||||| ||||    
T  40036180 gtgagcgcgctt 40036191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 21317513 - 21317703
Alignment:
Q  34 aaacttcctttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcgg 133  Q
    |||||||| ||||| |||||||||||||| || ||||| |||||||| || |||||| | || ||||||  |||||| || || || ||||||||||| |    
T  21317513 aaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctg 21317612  T
Q  134 aggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 224  Q
    | |||||||||||||| |||||||| ||||| || || |||||||| ||||||||| | |||||||| ||||||||||||||||| |||||    
T  21317613 aagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc 21317703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 3930165 - 3929960
Alignment:
Q  19 gaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgc 118  Q
    |||||||||||| | |||||||| |||||  |  | |||||||| || ||||| |||||||| || ||||| || ||||||||   |||||| || || |    
T  3930165 gaacttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctc 3930066  T
Q  119 tgcaagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattca 218  Q
    | |||||||| || || || ||||||||||| |||||||| ||||| || || || || || ||||||||| | |||||||| ||||| |||||||||||    
T  3930065 ttcaagaagctgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattca 3929966  T
Q  219 gcttgc 224  Q
     |||||    
T  3929965 acttgc 3929960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 12547185 - 12546997
Alignment:
Q  37 cttcctttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggagg 136  Q
    ||||| |||||| | ||||||||||| || |||||||||||||| || |||||||| || || |||  |||||| || || || |||||||| || || |    
T  12547185 cttccattccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaag 12547086  T
Q  137 cttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgct 225  Q
    ||||||||||||| |||||||| |||||||| ||||| || || ||||||||| | |||||||||||||||||||||||||| ||||||    
T  12547085 cttatcttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgct 12546997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 37 - 218
Target Start/End: Original strand, 12531434 - 12531615
Alignment:
Q  37 cttcctttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggagg 136  Q
    ||||| |||||| | ||||||||||| || |||||||||||||| || |||||||| || || |||  |||||| || || || |||||||| || || |    
T  12531434 cttccattccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaag 12531533  T
Q  137 cttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattca 218  Q
    ||||||||||||| |||||||| |||||||| ||||| || || ||||||||| | ||||||||||||||||||||||||||    
T  12531534 cttatcttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 12531615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 9866741 - 9866668
Alignment:
Q  139 tatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaagga 212  Q
    ||||||||||| |||||||| ||||||||||| || ||||| ||||||||| | |||||||| |||||| ||||    
T  9866741 tatcttgttggtttgtttgaagatactaacctttgtgctattcatgctaagagagttactattatgcctgagga 9866668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 9870022 - 9870102
Alignment:
Q  136 gcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatatt 216  Q
    |||||| ||||||| |||||| | |||| ||| || |||||||| ||||||||| | |||||||| |||||||||||||||    
T  9870022 gcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcctaaggatatt 9870102  T

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Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 55 - 224
Target Start/End: Original strand, 13576308 - 13576477
Alignment:
Q  55 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttgttggattgt 154  Q
    ||||| || |||||||| |||||||| ||||||||||||||||| |||  |||||| || || || |||||||| || || |||||||||||||| ||||    
T  13576308 gttcgagaaattgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 13576407  T
Q  155 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 224  Q
    |||||||||| || || || ||||| ||||||||| | |||||||| ||||||||||||||||| |||||    
T  13576408 ttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgc 13576477  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 250
Target Start/End: Complemental strand, 34571635 - 34571419
Alignment:
Q  34 aaacttcctttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcgg 133  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||||||||||| | || || ||||||  ||| ||    || || || ||||| ||||    
T  34571635 aaacttccattccagcgtcttgttcgtgaaattgctcaggatttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaagcagcgg 34571536  T
Q  134 aggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtat 233  Q
    | || ||| | ||||| |||||||||||||| ||  | || || || ||||||||| | ||||| || ||||||||||||||||| |||||| | |||||    
T  34571535 aagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgctcgccgtat 34571436  T
Q  234 ccgtggcgagcgtgctt 250  Q
    |||||| || |||||||    
T  34571435 ccgtggtgaacgtgctt 34571419  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 34579119 - 34579054
Alignment:
Q  18 cgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcaagatttcaagac 83  Q
    ||||||| | ||||| |||||||| |||||||||||||||||||| ||||||||  ||||||||||    
T  34579119 cgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagac 34579054  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 34584868 - 34584803
Alignment:
Q  18 cgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcaagatttcaagac 83  Q
    ||||||| | ||||| |||||||| |||||||||||||||||||| ||||||||  ||||||||||    
T  34584868 cgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagac 34584803  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 34562751 - 34562636
Alignment:
Q  124 gaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttg 223  Q
    ||||| ||||| || ||| | ||||| |||||||||||||| ||  | || || || ||||||||| | ||||| || ||||||||||||||||| ||||    
T  34562751 gaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttg 34562652  T
Q  224 ctaggcgtatccgtgg 239  Q
    || | |||||||||||    
T  34562651 cttgccgtatccgtgg 34562636  T

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Target: scaffold0197 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 30959 - 31140
Alignment:
Q  43 ttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatc 142  Q
    ||||| |||||||||||||| || ||||| |||||||| ||  ||||| | || ||||||  |||||| || || || |||||||| || || |||||||    
T  30959 ttccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatc 31058  T
Q  143 ttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 224  Q
    ||||||| |||||||| ||||| || || |||||||| ||||||||| | |||||||| ||||||||||||||||| |||||    
T  31059 ttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc 31140  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 250
Target Start/End: Complemental strand, 7594230 - 7594104
Alignment:
Q  124 gaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttg 223  Q
    ||||| || |||||||| || ||||||||||||||||| || || || || || || ||||||||| | || || || ||||| ||||||||||||||||    
T  7594230 gaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattcagcttg 7594131  T
Q  224 ctaggcgtatccgtggcgagcgtgctt 250  Q
    || | || || ||||| || |||||||    
T  7594130 ctcgtcgcattcgtggtgaacgtgctt 7594104  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 18492747 - 18492794
Alignment:
Q  34 aaacttcctttccagcgtcttgttcgtgagattgctcaagatttcaag 81  Q
    |||||||| |||||| ||||||||||||| ||| ||||||||||||||    
T  18492747 aaacttccattccagtgtcttgttcgtgaaatttctcaagatttcaag 18492794  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 7594451 - 7594401
Alignment:
Q  31 cgcaaacttcctttccagcgtcttgttcgtgagattgctcaagatttcaag 81  Q
    ||||| ||||| || ||||||||||| ||||| ||||||||||||||||||    
T  7594451 cgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaag 7594401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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