View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_75 (Length: 281)
Name: NF5418_low_75
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 31041590 - 31041334
Alignment:
| Q |
16 |
ccttctggtcctcatcgaacatcgcaaatataaacgcatctatagcttggtttggtcttcttggtgtgcctttaccactctgcaaatgttgaatcaagtt |
115 |
Q |
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| T |
31041590 |
ccttctggtcctcatcgaacatcgcaaatataaacgcatctatagcttggtttggtcttcttggtgtgcctttaccactctgcaaatgttgaatcaagtt |
31041491 |
T |
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| Q |
116 |
tgtgttatatgtcttagcattttccttacttgtgtaagggtcattccctgcagctggccaaccagtttctccaatgattagagaaacattttttgcatct |
215 |
Q |
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| T |
31041490 |
tgtgttatatgtcttagcattttctttacttgtgtaagggtcattccctgcagcaggccaaccagtttctccaataattagagaaacattttttgcatct |
31041391 |
T |
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| Q |
216 |
attttttccaatgctgcataaattgaatcaatcattgcatcgaaaaggttagtataa |
272 |
Q |
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| T |
31041390 |
attttttccaatgctgcataaattgaatcaaccattgcatcgaaaaggttagtataa |
31041334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 31046239 - 31045982
Alignment:
| Q |
16 |
ccttctggtcctcatcgaacatcgcaaatataaacgcatctatagcttggtttggtcttcttggtgtgcctttaccactctgcaaatgtt-gaatcaagt |
114 |
Q |
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||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31046239 |
ccttctggtcctcatcgaacatcgcaaatattaacacatttatagcttggtttggtcttcttggtgtgcctttaccactctgcaaatgtttgaatcaagt |
31046140 |
T |
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| Q |
115 |
ttgtgttatatgtcttagcattttccttacttgtgtaagggtcattccctgcagctggccaaccagtttctccaatgattagagaaacattttttgcatc |
214 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31046139 |
ttgtgttatatgtcttggcattttccttacttgtgtaagggtcattccctgcagcaggccaaccagtttctccaatgattagagaaacatcttttgcatc |
31046040 |
T |
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| Q |
215 |
tattttttccaatgctgcataaattgaatcaatcattgcatcgaaaaggttagtataa |
272 |
Q |
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| T |
31046039 |
tattttttccaatgctgcgtaaattgaatcaaccattgcatcgaaaagtttagtataa |
31045982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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