View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_76 (Length: 280)
Name: NF5418_low_76
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 5126367 - 5126118
Alignment:
| Q |
20 |
aagactaagatagcaatgatgaatttttacgttcatgaatctattaatataaattttgtctattgaataattaagtttatataggctcattttgttgagt |
119 |
Q |
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| T |
5126367 |
aagactaagatagcaatgatgaatttttacgttcatgaatctattaatataaattttgtctattgaataattaagtttatataggctcattttgttgagt |
5126268 |
T |
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| Q |
120 |
tatattggtaaagttatacaaatgttgtgatatgctgacttcaatgatggtagagaatctagatcagacaacaaccattgcacgtaaaagttacaccaca |
219 |
Q |
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| T |
5126267 |
tatattggtaaagttatacaaatgttgtgatatgctgacttcaatgatggtagagaatctagatcagacaacaaccattgcacgtaaaagttacaccaca |
5126168 |
T |
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| Q |
220 |
cccaactcatcagtttatgttgttgcctaattacattgtttgtcgccttt |
269 |
Q |
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| T |
5126167 |
cccaactcatcattttatgttgttgcctaattacattgtttgtcaccttt |
5126118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 40141403 - 40141511
Alignment:
| Q |
20 |
aagactaagatagcaatgatgaatttttacgttcatgaatctattaatataaattttgtctattgaataattaagt---ttatataggctcattttgttg |
116 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40141403 |
aagactaagatggcaatcatgaatttttacgttcatgaatctcttagtatagattttgtctattgaataattaagttgattatataggctcattttgttg |
40141502 |
T |
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| Q |
117 |
agttatatt |
125 |
Q |
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| T |
40141503 |
agttatatt |
40141511 |
T |
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