View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_79 (Length: 278)
Name: NF5418_low_79
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_79 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 47935367 - 47935635
Alignment:
| Q |
5 |
atccaatatataaaacataaatgtgagtatttaatatgtgggttcaaggacaataattatttcttccctcccctccaaaataaaatacaggatcttgtcc |
104 |
Q |
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| T |
47935367 |
atccaatatataaaacataaatgtgagtatttaatatgtgggttcaaggacaataattatttcttccctcccctccaaaataaaatacaggatcttgtcc |
47935466 |
T |
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| Q |
105 |
atatggagcttcattgagggcactgtaacagtatggttctgcagcataagtagttacatatgctggatatttgagagcttttgaataatccttaattcta |
204 |
Q |
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| T |
47935467 |
atatggagcttcattgagggcactgtaacaatatggttctgcagcataagtagttacatatgctggatatttgagagcttttgaataatccttaattcta |
47935566 |
T |
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| Q |
205 |
acattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgctcct |
273 |
Q |
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| T |
47935567 |
acattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgttcct |
47935635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 76 - 273
Target Start/End: Original strand, 47928004 - 47928201
Alignment:
| Q |
76 |
cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttctgcagcataagtagttacatatgctggatatt |
175 |
Q |
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| T |
47928004 |
cctccaaagtagaatacaggatcttttccatatggagcgtcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatact |
47928103 |
T |
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| Q |
176 |
tgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgctcct |
273 |
Q |
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| T |
47928104 |
taagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcatctccactacccatctgtgttcct |
47928201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 76 - 273
Target Start/End: Original strand, 47946580 - 47946777
Alignment:
| Q |
76 |
cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttctgcagcataagtagttacatatgctggatatt |
175 |
Q |
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| T |
47946580 |
cctccaaaaaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatact |
47946679 |
T |
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| Q |
176 |
tgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgctcct |
273 |
Q |
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| T |
47946680 |
tgagagtttctgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcct |
47946777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 47918242 - 47918310
Alignment:
| Q |
76 |
cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttct |
144 |
Q |
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| T |
47918242 |
cctccaaaatagaatacaggatcttttccatatggagcatcattgaaggcactgtaacaatatggttct |
47918310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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