View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_8 (Length: 607)
Name: NF5418_low_8
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Complemental strand, 20362378 - 20361810
Alignment:
| Q |
18 |
gtttcagcattccacaatcatgaattatgagacatgaatttagcaatggaagtaataaatgactgtgacataacaacttctagtcattcaatgggagcag |
117 |
Q |
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| T |
20362378 |
gtttcagcattccacaatcatgaattatgagacatgaatttagcaatggaagtaataaatgactgtgacataacaacttctagtcattcaatgggagcag |
20362279 |
T |
|
| Q |
118 |
acataatggttcgcggatcaaattaaaaaagaaacgaaactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatcatcccaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20362278 |
acataatggttcgcggatcaaattaaaaaagaaacgaaactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatcatcccaatt |
20362179 |
T |
|
| Q |
218 |
acacagaaataccatggtacataaagtcataaacacccatcatatttatttaattaactacacctacaaacaagtcgttccagcgcaaccaaaacaagca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20362178 |
acacagaaataccatggtacataaagtcataaacacccatcatatttatttaattaactacacctacaaacaagtctttccagcgcaaccaaaacaagca |
20362079 |
T |
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| Q |
318 |
tattcatggcaggtagattcctgcaaaaggaatacataatcaagggttaggggcataccggtgtgattacatataatgcagcagcagcaaagtatatgta |
417 |
Q |
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| T |
20362078 |
tatccatggcaggtagattcctgcaaaaggaatacataatcaagggttaggggcataccggtgtgattacatataatgcagcagcagcaaagtatatgta |
20361979 |
T |
|
| Q |
418 |
cggtaaaatgaaaagatgggtatgttgttatgattactaaccataaccataaccataaccatggcggggtgtattaggttttaatgagaaactttttgac |
517 |
Q |
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| T |
20361978 |
cggtaaaatgaaaagatgggtatgttgttatgattactaaccataaccataa------ccatggcggggtgtattaggttttaatgagaaactttttgac |
20361885 |
T |
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| Q |
518 |
atcaacatcaacaacatcaacaccaggatcttgaacaacatgagtctggaaagttgttagatcaggttttccttt |
592 |
Q |
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| T |
20361884 |
atcaacatcaacaatatcaacaccaggatcttgaacaacatgagtctggaaagttgttagatcaggttttccttt |
20361810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 21550084 - 21549882
Alignment:
| Q |
18 |
gtttcagcattccacaatcatgaattatgagacatgaattt--agcaatggaagtaataaatgactgtgacataacaacttctagtcattcaatgggag- |
114 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
21550084 |
gtttcagctttccacaatcatgaattatgagacatgaatttttagcaatggaagtaataaatgactatgacataacaacttggagtcattcaatgggaga |
21549985 |
T |
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| Q |
115 |
-----cagacataatggttcgcggatcaaattaaaaaagaaacgaaactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatca |
209 |
Q |
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||| ||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21549984 |
aaatacaggcataatggttcgcagatcaaattaagaaagaaatgaaactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatca |
21549885 |
T |
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| Q |
210 |
tcc |
212 |
Q |
| |
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||| |
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| T |
21549884 |
tcc |
21549882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 322 - 467
Target Start/End: Complemental strand, 21549882 - 21549737
Alignment:
| Q |
322 |
catggcaggtagattcctgcaaaaggaatacataatcaagggttaggggcataccggtgtgattacatataatgcagcagcagcaaagtatatgtacggt |
421 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||| |
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| T |
21549882 |
catggcaggtagattcctgcaaaaggaatgcataattaagggttaggggcataccgatgtgattaaatataatgcagcagcagcaacgtatatgtatggt |
21549783 |
T |
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| Q |
422 |
aaaatgaaaagatgggtatgttgttatgattactaaccataaccat |
467 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21549782 |
aaaatgaaaagatggatatgttgttatgattactaaccataaccat |
21549737 |
T |
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Back To:
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