View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_80 (Length: 278)
Name: NF5418_low_80
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 25712202 - 25712398
Alignment:
| Q |
12 |
aggagcacagaacgacgaacgacggtgacgatatggcggatctggtggctggtgaatgggacaccggcggtggtgcgcgcggtagcgcgaggacagcgtc |
111 |
Q |
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| T |
25712202 |
aggaacacataacgacgaacgacggtgacgatatggcggatctggtggctggtgaatgggacaccggcggtggtgcacgcggtagcgcgaggacagcgtc |
25712301 |
T |
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| Q |
112 |
gaaagagtattaagttgcggtggcttaaatgtttccgaaagaagtgattttttgcccttgaatttgttttactctgctgttagttttggtttagaat |
208 |
Q |
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| T |
25712302 |
gaaagagtatttagttgcggtggcttaaatgtttccgaaagaagtgattttttgcccttgaatttgttttactctgctgttagttttggtttagaat |
25712398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 25712450 - 25712489
Alignment:
| Q |
223 |
tgtgttgtgtttgtttgatagaaaatttggtgtggaaaag |
262 |
Q |
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| T |
25712450 |
tgtgttgtgtttgtttgatagaaaatttggtgtggaaaag |
25712489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 46106074 - 46106009
Alignment:
| Q |
143 |
tttccgaaagaagtgattttttgcccttgaatttgttttactctgctgttagttttggtttagaat |
208 |
Q |
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| T |
46106074 |
tttccgaaagaagtgatttcttccccttgtatttgttttactttgatgttagttttggtttagaat |
46106009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 29292654 - 29292612
Alignment:
| Q |
166 |
cccttgaatttgttttactctgctgttagttttggtttagaat |
208 |
Q |
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| T |
29292654 |
cccttgaatttgttttactttgctgttagttttggtttagaat |
29292612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 12049033 - 12049099
Alignment:
| Q |
143 |
tttccgaaagaagtgattttttgccc-ttgaatttgttttactctgctgttagttttggtttagaat |
208 |
Q |
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| T |
12049033 |
tttctgaaagaagtgatttttttccccttgtatttgttttactttgttgttagttttggtttggaat |
12049099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 26864677 - 26864641
Alignment:
| Q |
147 |
cgaaagaagtgattttttgcccttgaatttgttttac |
183 |
Q |
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| T |
26864677 |
cgaaagaagtgatttcttccccttgaatttgttttac |
26864641 |
T |
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