View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418_low_81 (Length: 271)

Name: NF5418_low_81
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418_low_81
NF5418_low_81
[»] chr8 (3 HSPs)
chr8 (7-184)||(39027316-39027493)
chr8 (134-170)||(39029143-39029179)
chr8 (179-213)||(26000550-26000584)
[»] chr2 (1 HSPs)
chr2 (181-225)||(30974013-30974057)
[»] chr3 (1 HSPs)
chr3 (171-213)||(50652381-50652423)
[»] chr7 (1 HSPs)
chr7 (173-213)||(22692079-22692119)
[»] chr6 (1 HSPs)
chr6 (177-225)||(14426947-14426995)
[»] chr1 (1 HSPs)
chr1 (172-224)||(30530599-30530651)


Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 39027316 - 39027493
Alignment:
Q  7 ctatggcggtggaagtaaaaagtggttggtgacaaattacacatgctctgcctctgctttgataaaggtaaatgtaaaatggatgggtgactattctgtc 106  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39027316 ctatggcggtggaagtaacaagtgtttggtgacaaattacacatgctctgcctctgctttgataaaggtaaatgtaaaatggatgggtgactattctgtc 39027415  T
Q  107 actacaatcatacttttaataattgattgattgattggatattcaatatataaattatgtgttaaattttagaaaaat 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  39027416 actacaatcatacttttaataattgattgattgattggatattcaatatataaattatgtattatattttagaaaaat 39027493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 39029143 - 39029179
Alignment:
Q  134 tgattgattggatattcaatatataaattatgtgtta 170  Q
    |||||||||||||||||||||||||||||||||||||    
T  39029143 tgattgattggatattcaatatataaattatgtgtta 39029179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 26000550 - 26000584
Alignment:
Q  179 aaaaatgatatttttacaagcattttatgacaact 213  Q
    ||||||||||||||||||| |||||||||||||||    
T  26000550 aaaaatgatatttttacaaccattttatgacaact 26000584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 30974057 - 30974013
Alignment:
Q  181 aaatgatatttttacaagcattttatgacaactgttcgacaactc 225  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||    
T  30974057 aaatgatatttttacaatcattttatgacaactttttgacaactc 30974013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 50652381 - 50652423
Alignment:
Q  171 aattttagaaaaatgatatttttacaagcattttatgacaact 213  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||    
T  50652381 aattttagagaaatgatatttgtacaaccattttatgacaact 50652423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 22692079 - 22692119
Alignment:
Q  173 ttttagaaaaatgatatttttacaagcattttatgacaact 213  Q
    ||||||| ||||||||||| ||||| |||||||||||||||    
T  22692079 ttttagagaaatgatatttgtacaaccattttatgacaact 22692119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 14426947 - 14426995
Alignment:
Q  177 agaaaaatgatatttttacaagcattttatgacaactgttcgacaactc 225  Q
    ||||||||||||||| ||||| |||||| ||| ||||||| ||||||||    
T  14426947 agaaaaatgatatttgtacaatcattttgtgataactgttggacaactc 14426995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 30530651 - 30530599
Alignment:
Q  172 attttagaaaaatgatatttttacaagcattttatgacaactgttcgacaact 224  Q
    |||||||| ||||||||||| ||||| |||||| |||||||| || |||||||    
T  30530651 attttagagaaatgatatttatacaaccattttgtgacaacttttagacaact 30530599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University