View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5418_low_82 (Length: 270)
Name: NF5418_low_82
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_82 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 33225239 - 33225489
Alignment:
| Q |
1 |
agtttgaggttatcgcatgaacatttatttttgcctaatgaagcacaatgtaccaattgtggttgacacagatggttgtgccttccgctcacatctgttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
33225239 |
agtttgaggttatcgcatgaacatttatttttgcctaatgaagca---tgtaccaattgtggttgacacaaatggttgtgccttccgctcacatctactg |
33225335 |
T |
|
| Q |
101 |
tgacttggttttgtgtttgaatcacacctttgataggttatactaaattccattgtaaatcttcaatgaggtttgaggttatcactaaccttgcatgcaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33225336 |
cgacttggtttcgtgtttgaatcacacctttgataggttatactaaattccattgtaaatcttcaatgaggtttgaggttatcactaaccttgcatggaa |
33225435 |
T |
|
| Q |
201 |
tgccccttccctaacctaacttgtttgacaataagatgaagcatggtgtccatt |
254 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33225436 |
tgccccttccctaacctaacttgttcgacaataagatgaagcatggtgtccatt |
33225489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 33223916 - 33224058
Alignment:
| Q |
43 |
gcacaatgtaccaattgtggttgacacagatggttgtgccttccgctcacatctgttgtgacttggttttgtgtttgaatcacacctttgataggttata |
142 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| |||| ||| ||||||| ||| ||||| ||||||||| |||||||| || |||||| |||||| |
|
|
| T |
33223916 |
gcacaatgtaccaattatggttgacacaaatggtcgtgcattctgctcacacctgctgtgaattggttttgcatttgaatcccatagttgatatgttata |
33224015 |
T |
|
| Q |
143 |
ctaaattccattgtaaatcttcaatgaggtttgaggttatcac |
185 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
33224016 |
ctaaattcagttgtaaatcttcaattaggtttgaggttatcac |
33224058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 33224044 - 33224132
Alignment:
| Q |
2 |
gtttgaggttatcgcatgaacatttatttttgcctaatgaagcacaatgtaccaattgtggttgacacagatggttgtgccttccgctca |
91 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||| ||||||||||||| | |||||||||||||||||||| |
|
|
| T |
33224044 |
gtttgaggttatcacatgaacatttctttttacctaatgaagcacaa-gtaccgattgtggttgacataaatggttgtgccttccgctca |
33224132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 33225152 - 33225252
Alignment:
| Q |
82 |
cttccgctcacatctgttgtgacttggttttgtgtttgaatcacacctttgataggttatactaaattccattgtaaatcttcaatgaggtttgaggtta |
181 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||||||||| || |||| |||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33225152 |
cttccgctcacaccttttgtgacttggtttcgtgtttgaatcccaaggttgacaggttata-taaattccattgtaaatcttcaatgaagtttgaggtta |
33225250 |
T |
|
| Q |
182 |
tc |
183 |
Q |
| |
|
|| |
|
|
| T |
33225251 |
tc |
33225252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University