View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5418_low_86 (Length: 255)
Name: NF5418_low_86
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_86 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0428 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 239
Target Start/End: Complemental strand, 2791 - 2576
Alignment:
| Q |
27 |
ctgacatgtagacattgataataaatttaaaaaatgcaatacctgaacgtaaccacatgtgcgggtgttagttgtacacaag-aaaattgagnnnnnnnt |
125 |
Q |
| |
|
||||||||| | ||||| |||||| |||| |||||||| | ||||| |||||||||||||| | |||||||||||| |||| ||||||||| | |
|
|
| T |
2791 |
ctgacatgtcggcattggtaataattttagaaaatgcatcaactgaatgtaaccacatgtgcagatgttagttgtacccaagcaaaattgagaataaaat |
2692 |
T |
|
| Q |
126 |
ggatgtctttgatgcaaatattaaattgt--aatgatgtgttgcaggaaatcaacggtagtggtctcggcctctctagataagcaactatgggaaaaaat |
223 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||| || |||||||||||||||||||| ||||||| |||| | | | ||||||||| | ||| ||| |
|
|
| T |
2691 |
ggacgtctttgatgcaaatattaaattgttcaatgttgggttgcaggaaatcaacggtactggtctcagcctttttggttaagcaactgcgagaagaaac |
2592 |
T |
|
| Q |
224 |
cggtgcagggatgatg |
239 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2591 |
cggtgcagggatgatg |
2576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 239
Target Start/End: Complemental strand, 33258670 - 33258455
Alignment:
| Q |
27 |
ctgacatgtagacattgataataaatttaaaaaatgcaatacctgaacgtaaccacatgtgcgggtgttagttgtacacaag-aaaattgagnnnnnnnt |
125 |
Q |
| |
|
||||||||| | ||||| |||||| |||| |||||||| | ||||| |||||||||||||| | |||||||||||| |||| ||||||||| | |
|
|
| T |
33258670 |
ctgacatgtcggcattggtaataattttagaaaatgcatcaactgaatgtaaccacatgtgcagatgttagttgtacccaagcaaaattgagaataaaat |
33258571 |
T |
|
| Q |
126 |
ggatgtctttgatgcaaatattaaattgt--aatgatgtgttgcaggaaatcaacggtagtggtctcggcctctctagataagcaactatgggaaaaaat |
223 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||| || |||||||||||||||||||| ||||||| |||| | | | ||||||||| | ||| ||| |
|
|
| T |
33258570 |
ggacgtctttgatgcaaatattaaattgttcaatgttgggttgcaggaaatcaacggtactggtctcagcctttttggttaagcaactgcgagaagaaac |
33258471 |
T |
|
| Q |
224 |
cggtgcagggatgatg |
239 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33258470 |
cggtgcagggatgatg |
33258455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 33384409 - 33384221
Alignment:
| Q |
20 |
actaacgctgacatgtagacattgataataaatttaaaaaatgcaatacctgaacgtaaccacatgtgcgggtgttagttgtacacaagaaaa-ttgagn |
118 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||| |||| ||||||||| | ||||||||| ||||||||| ||| ||||| |||||||| || || |
|
|
| T |
33384409 |
actaacgctggcatgtcgacattggtaataattttagaaaatgcaacaactgaacgtagccacatgtgtaggt------tgtactcaagaaaagtttaga |
33384316 |
T |
|
| Q |
119 |
nnnnnntggatgtctttgatgcaaatattaaattgt--aatgatgtgttgcaggaaatcaacggtagtggtctcggcctctctagataagcaact |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||| | | ||||||||| |
|
|
| T |
33384315 |
aaaaaatggatgtctttgatgcaaatattaaattgctcaatgttgttttgcaggaaatcaacggtagtggtctcagcctctttggttaagcaact |
33384221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 24633751 - 24633783
Alignment:
| Q |
20 |
actaacgctgacatgtagacattgataataaat |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24633751 |
actaacgctgacatgtagacattgataataaat |
24633783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 17445367 - 17445404
Alignment:
| Q |
155 |
aatgatgtgttgcaggaaatcaacggtagtggtctcgg |
192 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17445367 |
aatgttgtgttgcaggaaatcaacggtagtggtctcgg |
17445404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University