View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_87 (Length: 255)
Name: NF5418_low_87
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 6995217 - 6995045
Alignment:
| Q |
1 |
actgtaagacgagaaataagagactccttcaactcccgagtcaaagatcttctccacaaacgcggatcatcgtcacaaaagcgatccaaaatgtggaaca |
100 |
Q |
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| T |
6995217 |
actgtgagacgagaaataagagactccttcaactcccgagtcaaagatcttctccacaaacgcggatcatcgtcacaaaagcgatccaaaatgtggaaca |
6995118 |
T |
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| Q |
101 |
tatcaagtcctgaaaggcactgatgataagaagaaataacagtttaacaatatggcaaacaattaacatctta |
173 |
Q |
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| T |
6995117 |
tatcaagtcctgaaaggcactgatgataagaagaaataacagtttaacaatatggcaaacaattaacatctta |
6995045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 7047869 - 7047738
Alignment:
| Q |
1 |
actgtaagacgagaaataagagactccttcaactcccgagtcaaagatcttctccacaaacgcggatcatcgtcacaaaagcgatccaaaatgtggaaca |
100 |
Q |
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| T |
7047869 |
actgtgagacgagaactaagagacgcattcagctcctgagtcaaagatcttctccacatacgcaaatcatctttacaaatgctagccaaaatgttgaact |
7047770 |
T |
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| Q |
101 |
tatcaagtcctgaaaggcactgatgataagaa |
132 |
Q |
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| T |
7047769 |
tgttaattcctgagagacactgaagataagaa |
7047738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 7056740 - 7056613
Alignment:
| Q |
1 |
actgtaagacgagaaataagagactccttcaactcccgagtcaaagatcttctccacaaacgcggatcatcgtcacaaaagcgatccaaaatgtggaaca |
100 |
Q |
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| T |
7056740 |
actgtgagacgagaattaagagacgcattcagctcctgagtcaaagatctcctccacatatgcaaatcatcttcacaaaagctacccacaatgttgaaca |
7056641 |
T |
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| Q |
101 |
tatcaagtcctgaaaggcactgatgata |
128 |
Q |
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| T |
7056640 |
aattaattcctgagagacactgaagata |
7056613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 7014643 - 7014511
Alignment:
| Q |
27 |
cttcaactcccgagtcaaagatcttctccacaaacgcggatcatcgtcacaaaagcgatccaaaatgtggaacatatcaagtcctgaaaggcactgatga |
126 |
Q |
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| T |
7014643 |
cttcaactcctgaatcaatgatcttctccagagatgcggatcatcttcacaatagctatccaaaatgttgaatgtattaattcctgagagacactgcaga |
7014544 |
T |
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| Q |
127 |
taagaagaaataacagtttaacaatatggcaaacaa |
162 |
Q |
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| T |
7014543 |
t---aagaaataatagtttaagaatatggtaaacaa |
7014511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 7004952 - 7004821
Alignment:
| Q |
1 |
actgtaagacgagaaataagagactccttcaactcccgagtcaaagatcttctccacaaacgcggatcatcgtcacaaaagcgatccaaaatgtggaaca |
100 |
Q |
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||||| ||||||||| ||||||| || |||| |||| ||||||||||||| ||||||| | || ||||| |||||| || ||||||||||| |||| |
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| T |
7004952 |
actgtgagacgagaactaagagattcgttcagctcctgagtcaaagatctcctccacagatgctcgtcatcttcacaattgctatccaaaatgttgaact |
7004853 |
T |
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| Q |
101 |
tatcaagtcctgaaaggcactgatgataagaa |
132 |
Q |
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| T |
7004852 |
cattaattgctgagagacactgaagataagaa |
7004821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 7028253 - 7028200
Alignment:
| Q |
41 |
tcaaagatcttctccacaaacgcggatcatcgtcacaaaagcgatccaaaatgt |
94 |
Q |
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| T |
7028253 |
tcaacgatctcctccacagacgcgaatcatcttcacaaaagccatccaaaatgt |
7028200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 7040701 - 7040613
Alignment:
| Q |
40 |
gtcaaagatcttctccacaaacgcggatcatcgtcacaaaagcgatccaaaatgtggaacatatcaagtcctgaaaggcactgatgata |
128 |
Q |
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| T |
7040701 |
gtcaatgatctcctccagagatgcgaatcatcttcacaatagctatccaaaatgttgaatgtattaattcctgaaaggcactgaagata |
7040613 |
T |
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