View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5418_low_89 (Length: 253)

Name: NF5418_low_89
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5418_low_89
NF5418_low_89
[»] chr5 (8 HSPs)
chr5 (20-83)||(11794035-11794098)
chr5 (20-93)||(11838726-11838800)
chr5 (211-253)||(16751991-16752033)
chr5 (112-166)||(18395231-18395285)
chr5 (185-253)||(27116010-27116076)
chr5 (211-253)||(20079193-20079235)
chr5 (211-253)||(40074796-40074838)
chr5 (20-68)||(11744672-11744720)
[»] chr7 (5 HSPs)
chr7 (185-253)||(41113541-41113608)
chr7 (211-253)||(30876134-30876176)
chr7 (211-252)||(25801501-25801542)
chr7 (185-253)||(1469404-1469470)
chr7 (185-253)||(7335881-7335948)
[»] chr6 (4 HSPs)
chr6 (185-252)||(10931376-10931441)
chr6 (211-253)||(1077401-1077443)
chr6 (206-251)||(10931078-10931123)
chr6 (211-252)||(17942884-17942925)
[»] chr2 (5 HSPs)
chr2 (211-253)||(36210892-36210934)
chr2 (206-253)||(37654257-37654304)
chr2 (211-253)||(11949361-11949403)
chr2 (211-252)||(25087731-25087772)
chr2 (225-253)||(37653997-37654025)
[»] chr1 (8 HSPs)
chr1 (211-253)||(45670710-45670752)
chr1 (206-253)||(49094641-49094688)
chr1 (211-253)||(21929690-21929732)
chr1 (211-253)||(23767350-23767392)
chr1 (211-253)||(50533229-50533271)
chr1 (117-166)||(16063512-16063561)
chr1 (121-166)||(32923375-32923420)
chr1 (211-251)||(4245162-4245202)
[»] chr4 (10 HSPs)
chr4 (211-252)||(48149345-48149386)
chr4 (206-253)||(20534358-20534405)
chr4 (211-253)||(24623292-24623334)
chr4 (211-253)||(33173955-33173997)
chr4 (211-253)||(51371329-51371371)
chr4 (185-252)||(15985175-15985239)
chr4 (207-251)||(23552904-23552948)
chr4 (185-253)||(25730404-25730471)
chr4 (185-253)||(30466913-30466980)
chr4 (185-253)||(40988793-40988859)
[»] chr3 (10 HSPs)
chr3 (206-253)||(20913684-20913731)
chr3 (206-253)||(20921802-20921849)
chr3 (211-249)||(37247802-37247840)
chr3 (211-253)||(37248120-37248162)
chr3 (211-253)||(40922100-40922142)
chr3 (211-253)||(50364842-50364884)
chr3 (211-253)||(50977739-50977781)
chr3 (211-253)||(51080871-51080913)
chr3 (211-252)||(35346406-35346447)
chr3 (211-251)||(32650755-32650795)
[»] chr8 (4 HSPs)
chr8 (185-253)||(21356687-21356753)
chr8 (211-252)||(23935108-23935149)
chr8 (211-248)||(28496290-28496327)
chr8 (211-252)||(33652006-33652047)
[»] scaffold0727 (1 HSPs)
scaffold0727 (207-251)||(5025-5069)


Alignment Details
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 11794035 - 11794098
Alignment:
Q  20 gtgggcaagtggcagttgcgggaattgttggagtaaactcaaagccacatctaattgacaacat 83  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||    
T  11794035 gtgggcaagtggcaattgctggaatcgttggagtaaactcaaagccacatctatttgacaacat 11794098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 11838726 - 11838800
Alignment:
Q  20 gtgggcaagtggcagttgcgggaattgttggagtaaactcaaagccacatctaat-tgacaacatactagcattt 93  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  11838726 gtgggtaagtggcaattgcgggaatcgttggagtaaactcaaagccgcatctaatatgacaacatattagcattt 11838800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 16751991 - 16752033
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||| ||| ||||||||||||||||||||||||||||||||    
T  16751991 tttttcgttttttctaaagtggtcatttaagtttcaaaagtct 16752033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 18395285 - 18395231
Alignment:
Q  112 agccatgttatttgaacaattatttgtgaaataatttttgggtcaatcataaatt 166  Q
    |||| ||||||||||||||  |||||||| |||||||||||| ||||||||||||    
T  18395285 agccgtgttatttgaacaaccatttgtgagataatttttgggacaatcataaatt 18395231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 27116010 - 27116076
Alignment:
Q  185 aaatgtatctaaaagtttttgtaagttttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    ||||||||||||| ||| || ||||||||| | ||| ||||||||||||| ||||||||||||||||||    
T  27116010 aaatgtatctaaaggttctt-taagttttt-cgttttttctaaagtggtcttttaagtttcaaaagtct 27116076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 20079193 - 20079235
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||||||| || |||||||||| ||||||||||||||||||    
T  20079193 tttttcattttttttaaagtggtcctttaagtttcaaaagtct 20079235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 40074796 - 40074838
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||||||| || |||||||||| ||||||||||||||||||    
T  40074796 tttttcattttttttaaagtggtcctttaagtttcaaaagtct 40074838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 11744720 - 11744672
Alignment:
Q  20 gtgggcaagtggcagttgcgggaattgttggagtaaactcaaagccaca 68  Q
    ||||||||  |||| || |||||||| ||||||||||||||||||||||    
T  11744720 gtgggcaataggcatttccgggaattcttggagtaaactcaaagccaca 11744672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 41113608 - 41113541
Alignment:
Q  185 aaatgtatctaaaagtttttgtaagttttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    ||||||||||||| ||| || |||||||||||||||  || ||||||||| ||||||||||||||||||    
T  41113608 aaatgtatctaaaggttatt-taagttttttcattttctccaaagtggtcctttaagtttcaaaagtct 41113541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 30876134 - 30876176
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||||||| || |||||||||| ||||||||||||||||||    
T  30876134 tttttcattttttttaaagtggtcctttaagtttcaaaagtct 30876176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 25801501 - 25801542
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtc 252  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  25801501 tttttcattttttccaaagtggtcctttaagtttcaaaagtc 25801542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 1469404 - 1469470
Alignment:
Q  185 aaatgtatctaaaagtttttgtaagttttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    ||||||||||||| || ||| ||||||||| ||||| | ||||||||||| ||||||||||||| ||||    
T  1469404 aaatgtatctaaaggtcttt-taagttttt-catttttcctaaagtggtcctttaagtttcaaaggtct 1469470  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 7335881 - 7335948
Alignment:
Q  185 aaatgtatctaaaagtttttgtaagttttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    ||||| ||||||| || ||| ||||||||||| ||| ||| ||| | ||||||||||||||||||||||    
T  7335881 aaatgcatctaaaggtcttt-taagttttttcgttttttccaaaatcgtcatttaagtttcaaaagtct 7335948  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 10931441 - 10931376
Alignment:
Q  185 aaatgtatctaaaagtttttgtaagttttttcatttattctaaagtggtcatttaagtttcaaaagtc 252  Q
    ||||||||||||| ||||||  |||||||||| ||| || |||||||||| |||||||||||||||||    
T  10931441 aaatgtatctaaaggttttt--aagttttttcgttttttttaaagtggtcctttaagtttcaaaagtc 10931376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 1077443 - 1077401
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||| ||| | ||||||||||||||||||||||||||||||    
T  1077443 tttttcgtttttcctaaagtggtcatttaagtttcaaaagtct 1077401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 10931078 - 10931123
Alignment:
Q  206 taagttttttcatttattctaaagtggtcatttaagtttcaaaagt 251  Q
    ||||||||||| ||| | ||||||||||| ||||||||||||||||    
T  10931078 taagttttttcgtttttcctaaagtggtcctttaagtttcaaaagt 10931123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 17942884 - 17942925
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtc 252  Q
    |||||| ||| ||| |||||||||||||||||||||||||||    
T  17942884 tttttcgttttttccaaagtggtcatttaagtttcaaaagtc 17942925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 36210892 - 36210934
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||| ||| ||||||||||||||||||||||||||||||||    
T  36210892 tttttcgttttttctaaagtggtcatttaagtttcaaaagtct 36210934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 37654304 - 37654257
Alignment:
Q  206 taagttttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    ||||||||||| ||| ||| ||||||||| ||||||||||||||||||    
T  37654304 taagttttttcgttttttccaaagtggtcctttaagtttcaaaagtct 37654257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 11949361 - 11949403
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||    
T  11949361 tttttcattttttccaaagtggtcatttaagtttcaaatgtct 11949403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 25087731 - 25087772
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtc 252  Q
    |||||||||| || |||||||||||||| |||||||||||||    
T  25087731 tttttcattttttttaaagtggtcattttagtttcaaaagtc 25087772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 253
Target Start/End: Original strand, 37653997 - 37654025
Alignment:
Q  225 taaagtggtcatttaagtttcaaaagtct 253  Q
    |||||||||||||||||||||||||||||    
T  37653997 taaagtggtcatttaagtttcaaaagtct 37654025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 45670752 - 45670710
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||| ||| ||||||||||||||||||||||||||||||||    
T  45670752 tttttcgttttttctaaagtggtcatttaagtttcaaaagtct 45670710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 49094641 - 49094688
Alignment:
Q  206 taagttttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    ||||||||||||||| | |||||||| || ||||||||||||||||||    
T  49094641 taagttttttcatttttcctaaagtgatcctttaagtttcaaaagtct 49094688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 21929732 - 21929690
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||| ||| ||||||||||||| ||||||||||||||||||    
T  21929732 tttttcgttttttctaaagtggtcctttaagtttcaaaagtct 21929690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 23767350 - 23767392
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||||||| | ||||||||||| ||||||||||||||||||    
T  23767350 tttttcatttttcctaaagtggtcctttaagtttcaaaagtct 23767392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 50533229 - 50533271
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||||||| ||| |||||||||||||||||| |||||||||    
T  50533229 tttttcattttttccaaagtggtcatttaagttacaaaagtct 50533271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 16063512 - 16063561
Alignment:
Q  117 tgttatttgaacaattatttgtgaaataatttttgggtcaatcataaatt 166  Q
    |||||||||||||| ||||||||  |||||||||||| ||| ||||||||    
T  16063512 tgttatttgaacaactatttgtgtgataatttttgggacaaccataaatt 16063561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 32923420 - 32923375
Alignment:
Q  121 atttgaacaattatttgtgaaataatttttgggtcaatcataaatt 166  Q
    ||||||||||| |||||||| | |||||||||| ||||||||||||    
T  32923420 atttgaacaatcatttgtgagacaatttttgggacaatcataaatt 32923375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 4245162 - 4245202
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagt 251  Q
    |||||| ||| || |||||||||||||||||||||||||||    
T  4245162 tttttcgttttttgtaaagtggtcatttaagtttcaaaagt 4245202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 48149345 - 48149386
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtc 252  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  48149345 tttttcattttttctaaagtagtcatttaagtttcaaaagtc 48149386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 20534405 - 20534358
Alignment:
Q  206 taagttttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    ||||||||||| ||| ||| ||||||||| ||||||||||||||||||    
T  20534405 taagttttttcgttttttccaaagtggtcctttaagtttcaaaagtct 20534358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 24623334 - 24623292
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||| ||| || |||||||||||||||||||||||||||||    
T  24623334 tttttcgttttttttaaagtggtcatttaagtttcaaaagtct 24623292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 33173955 - 33173997
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||    
T  33173955 tttttcattttttccaaagtcgtcatttaagtttcaaaagtct 33173997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 51371371 - 51371329
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||    
T  51371371 tttttcgttttttctaaagtggtcatttaaatttcaaaagtct 51371329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 15985239 - 15985175
Alignment:
Q  185 aaatgtatctaaaagtttttgtaagttttttcatttattctaaagtggtcatttaagtttcaaaagtc 252  Q
    ||||||||||||||||||||  ||||||||   ||| ||| ||||||||| |||||||||||||||||    
T  15985239 aaatgtatctaaaagttttt--aagtttttcgtttttttc-aaagtggtcctttaagtttcaaaagtc 15985175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 23552904 - 23552948
Alignment:
Q  207 aagttttttcatttattctaaagtggtcatttaagtttcaaaagt 251  Q
    |||||||||| ||| | ||||||||||| ||||||||||||||||    
T  23552904 aagttttttcgtttttcctaaagtggtcctttaagtttcaaaagt 23552948  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 25730471 - 25730404
Alignment:
Q  185 aaatgtatctaaaagtttttgtaagttttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    ||||||||||||| ||  || ||||||||| ||||| ||| ||||| ||| ||||||||||||||||||    
T  25730471 aaatgtatctaaatgtccttttaagttttt-cattttttccaaagtcgtcctttaagtttcaaaagtct 25730404  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 30466913 - 30466980
Alignment:
Q  185 aaatgtatctaaaagtttttgtaagttttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    ||||| ||||||| || ||| |||||||||   ||| ||||||||||||| ||||||||||||||||||    
T  30466913 aaatgcatctaaaggtcttt-taagtttttcgtttttttctaaagtggtcctttaagtttcaaaagtct 30466980  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 40988859 - 40988793
Alignment:
Q  185 aaatgtatctaaaagtttttgtaagttttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    ||||||||||||||||  || ||||||||||  ||| | ||||||||||| ||||||||||||||||||    
T  40988859 aaatgtatctaaaagtcctt-taagttttttgtttt-tcctaaagtggtcctttaagtttcaaaagtct 40988793  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 20913684 - 20913731
Alignment:
Q  206 taagttttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    ||||||||||| ||| | | ||||||||||||||||||||||||||||    
T  20913684 taagttttttcgtttttcccaaagtggtcatttaagtttcaaaagtct 20913731  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 20921802 - 20921849
Alignment:
Q  206 taagttttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    ||||||||||| ||| | | ||||||||||||||||||||||||||||    
T  20921802 taagttttttcgtttttcccaaagtggtcatttaagtttcaaaagtct 20921849  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 37247802 - 37247840
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaa 249  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  37247802 tttttcgttttttctaaagtggtcatttaagtttcaaaa 37247840  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 37248162 - 37248120
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||| ||| ||||||||||||| ||||||||||||||||||    
T  37248162 tttttcgttttttctaaagtggtcctttaagtttcaaaagtct 37248120  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 40922100 - 40922142
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||||||| | ||||||||||| ||||||||||||||||||    
T  40922100 tttttcatttttcctaaagtggtcttttaagtttcaaaagtct 40922142  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 50364842 - 50364884
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||||||| | | ||||||||||||||||||||||||||||    
T  50364842 tttttcatttttcccaaagtggtcatttaagtttcaaaagtct 50364884  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 50977739 - 50977781
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||| ||| ||||||||||||| ||||||||||||||||||    
T  50977739 tttttcgttttttctaaagtggtcctttaagtttcaaaagtct 50977781  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 51080871 - 51080913
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    |||||| ||| ||||||||||||| ||||||||||||||||||    
T  51080871 tttttcgttttttctaaagtggtcctttaagtttcaaaagtct 51080913  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 35346406 - 35346447
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtc 252  Q
    |||||||||| | ||||||||||| |||||||||||||||||    
T  35346406 tttttcatttttcctaaagtggtcctttaagtttcaaaagtc 35346447  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 32650755 - 32650795
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagt 251  Q
    |||||| ||| ||||||||||||| ||||||||||||||||    
T  32650755 tttttcgttttttctaaagtggtcctttaagtttcaaaagt 32650795  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 21356753 - 21356687
Alignment:
Q  185 aaatgtatctaaaagtttttgtaagttttttcatttattctaaagtggtcatttaagtttcaaaagtct 253  Q
    ||||||||||||| ||||||  |||||||||| ||| | | ||||||||| ||||||||| ||||||||    
T  21356753 aaatgtatctaaaggttttt--aagttttttcgtttttcccaaagtggtcctttaagtttaaaaagtct 21356687  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 23935108 - 23935149
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtc 252  Q
    |||||| ||| ||| |||||||||||||||||||||||||||    
T  23935108 tttttcgttttttccaaagtggtcatttaagtttcaaaagtc 23935149  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 28496290 - 28496327
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaa 248  Q
    |||||||||| || ||||||||||||||||||||||||    
T  28496290 tttttcattttttataaagtggtcatttaagtttcaaa 28496327  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 33652047 - 33652006
Alignment:
Q  211 tttttcatttattctaaagtggtcatttaagtttcaaaagtc 252  Q
    |||||||||| | ||||||||||| |||||||||||||||||    
T  33652047 tttttcatttttcctaaagtggtcttttaagtttcaaaagtc 33652006  T

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Target: scaffold0727 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 5025 - 5069
Alignment:
Q  207 aagttttttcatttattctaaagtggtcatttaagtttcaaaagt 251  Q
    |||||||||| ||| | ||||||||||| ||||||||||||||||    
T  5025 aagttttttcgtttttcctaaagtggtcctttaagtttcaaaagt 5069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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