View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_90 (Length: 253)
Name: NF5418_low_90
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_90 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 54089384 - 54089527
Alignment:
| Q |
80 |
caattgaaaagggaagactcaattttttcacgtatcttttatgggcaaaaagaaagatcggtgtgtgtattgttacatatattttttaaaggacatattg |
179 |
Q |
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| T |
54089384 |
caattgaaaagggaagactcaattttttcacgtatcttttataagcaaaaagaaagatcggtgtgtgtattgttacatatattttttaaaggacatattg |
54089483 |
T |
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| Q |
180 |
ttacatttcttttgtgtgtacacacacatcatatttacaatatc |
223 |
Q |
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| T |
54089484 |
ttacatttctgttgtgtgtacacacacatcatatttacaatatc |
54089527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 54089119 - 54089175
Alignment:
| Q |
1 |
aatttaatccataaattaccactctccaatttactttactacttaggtctcactacc |
57 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54089119 |
aatttaatccataaattaccactctccaatttactttactacttaggtctcactacc |
54089175 |
T |
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