View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_92 (Length: 251)
Name: NF5418_low_92
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_92 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 32526984 - 32526728
Alignment:
| Q |
11 |
cacagaatcgatcaaatgtttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccactttcattctccactcttgctttgaa |
110 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32526984 |
cacataatcgatcaaatgcttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccactttcattctccactcttgctttgaa |
32526885 |
T |
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| Q |
111 |
tttccaaaatacttgtgctac----------------agaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactacca |
194 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32526884 |
tttcctaaatacttgtgctacctctgacttgtgcttcagaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactacca |
32526785 |
T |
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| Q |
195 |
ttcaaagaagatgttctttgtgggcctgcaatgtcagtatgaattaattgcaacttc |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32526784 |
ttcaaagaagatgttctttgtgggcctgcaatgtcagtatgaattaattgcaacttc |
32526728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 28391380 - 28391124
Alignment:
| Q |
11 |
cacagaatcgatcaaatgtttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccactttcattctccactcttgctttgaa |
110 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28391380 |
cacataatcgatcaaatgcttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccactttcattctccactcttgctttgaa |
28391281 |
T |
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| Q |
111 |
tttccaaaatacttgtgctac----------------agaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactacca |
194 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28391280 |
tttccgaaatacttgtgctacctctgacttgtgcttcagaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactacca |
28391181 |
T |
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| Q |
195 |
ttcaaagaagatgttctttgtgggcctgcaatgtcagtatgaattaattgcaacttc |
251 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28391180 |
ttcaaagaagatgttctttgtgggcctacaatgtcagtatgaattaattgcaacttc |
28391124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 6837595 - 6837850
Alignment:
| Q |
11 |
cacagaatcgatcaaatgtttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccactttcattctccactcttgctttgaa |
110 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6837595 |
cacagaatcgatcaaatgcttcagaagtatactctttgtcattgtctgatctgagagcttgaattttacaaccactttcattctccactcttgctttgaa |
6837694 |
T |
|
| Q |
111 |
tttccaaaatacttgtgctac----------------agaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactacca |
194 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
6837695 |
tttccaaaatacttgtgccacctctgacttgtgcttcagaaagaaaatccaacacatacaggtaaaatcatcaatgaatatagcataataaagactgtca |
6837794 |
T |
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| Q |
195 |
ttcaaagaagatgttctttgtgggcctgcaatgtcagtatgaattaattgcaactt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6837795 |
ttcaaagaagatgttctttgtgggcctgcaatgtcagtatgaattaattgcaactt |
6837850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 247
Target Start/End: Original strand, 8976179 - 8976407
Alignment:
| Q |
39 |
atactctttgccattgtctgatctgagagcttgaattttacaaccactttcattctccactcttgctttgaatttccaaaatacttg------------- |
125 |
Q |
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||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
8976179 |
atactcttttccattgtttgatatgagagcttgaattttacaaccactttcattctccactcttgctttgaagttccataatacttgtgttacctcttac |
8976278 |
T |
|
| Q |
126 |
---tgctacagaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactaccattcaaagaa----gatgttctttgtggg |
218 |
Q |
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|||| ||||||||| || ||||||||||| |||| ||||||||||| ||||||||||| |||||||||| |||| ||| | |||||||||||| |
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| T |
8976279 |
ttttgcttcagaaagaagatacaacacatacgagtaatatcatcaatgagtatagcataatgaagactaccaatcaatgaaggtcggtgttctttgtggt |
8976378 |
T |
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| Q |
219 |
cctgcaatgtcagtatgaattaattgcaa |
247 |
Q |
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| T |
8976379 |
tctacaatgttagtatgaattaattgcaa |
8976407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 28599553 - 28599656
Alignment:
| Q |
145 |
aacacatacgggtaaaatcatcaatgaatatagcataataaagactaccattcaaagaagatgttctttgtgggcctgcaatgtcagtatgaattaattg |
244 |
Q |
| |
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|||||||||| ||||||||| |||||||||||| |||||||||||| |||||| ||| ||||||| |||||||||||| |||||||||||||||| |
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| T |
28599553 |
aacacatacgagtaaaatcaacaatgaatatagtataataaagactgtcattca---aaggtgttcttcatgggcctgcaatatcagtatgaattaattt |
28599649 |
T |
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| Q |
245 |
caacttc |
251 |
Q |
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||||||| |
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| T |
28599650 |
caacttc |
28599656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 6386054 - 6385806
Alignment:
| Q |
11 |
cacagaatcgatcaaatgtttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccactttcattctccactcttg-ctttga |
109 |
Q |
| |
|
|||| ||||||||||||| ||||||| |||||| |||||| || || ||||| |||| |||||| ||||||||| ||||||||||||| | ||||| |
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| T |
6386054 |
cacaaaatcgatcaaatgcttcagaa-tatactatttgccgttatcagatctaagagtttgaatgttacaaccatcctcattctccactccagattttga |
6385956 |
T |
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| Q |
110 |
atttccaaaatacttgtgctac----------------agaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactacc |
193 |
Q |
| |
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||| | |||||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||||| |||||||| ||||| | |
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| T |
6385955 |
attgctaaaatacttgtgctacctaaggattgtgctttagaaagaagatccaacacatacaactaaaatcatcaatgcatataacataataatgactatc |
6385856 |
T |
|
| Q |
194 |
attcaaagaagatgttctttgtgggcctgcaatgtcagtatgaattaatt |
243 |
Q |
| |
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|| |||||||| ||||||||| || | ||||||| ||||| |||||||| |
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| T |
6385855 |
atgcaaagaaggtgttctttgcggacatgcaatgcaagtataaattaatt |
6385806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 13813010 - 13812803
Alignment:
| Q |
11 |
cacagaatcgatcaaatgtttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccactttcattctccactcttgctttgaa |
110 |
Q |
| |
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||||||||||||| |||| || ||||||||||| ||| |||||||||||||| ||||||||||||||| ||||||| | |||||||||| |||||||| |
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| T |
13813010 |
cacagaatcgatcgaatgctttagaagtatacttttttccattgtctgatctaagagcttgaattttaaaaccactcctactctccactctagctttgaa |
13812911 |
T |
|
| Q |
111 |
tttccaaaatacttgtgctacagaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactaccattcaaagaagatgttc |
210 |
Q |
| |
|
|||||||||||||||||| |||||| || |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| ||||| |
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| T |
13812910 |
gttccaaaatacttgtgctttagaaag-aattccaacacatactagtaaaatcatcaatgaatat----taataaagactaccatt---tgaaggtgttc |
13812819 |
T |
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| Q |
211 |
tttgtgggcctgcaat |
226 |
Q |
| |
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|||||| ||||||||| |
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| T |
13812818 |
tttgtgagcctgcaat |
13812803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 20082137 - 20082386
Alignment:
| Q |
11 |
cacagaatcgatcaaatgtttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccactttcattctccactcttgctttgaa |
110 |
Q |
| |
|
|||| |||||||| |||| ||||||||||| |||||| | |||||||||| ||||| |||| |||||||||||||||| |||| || ||||||| |
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| T |
20082137 |
cacataatcgatccaatgcttcagaagtattctcttttctattgtctgatacgagagtttgacttttacaaccactttctttct------tttctttgaa |
20082230 |
T |
|
| Q |
111 |
tttccaaaatacttgtgcta----------------cagaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactacca |
194 |
Q |
| |
|
||||||||||||||||||| || |||||| ||| |||||||||| ||||||||| ||||||||| ||||||| |||||||| |
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| T |
20082231 |
gttccaaaatacttgtgctacaaatggcttgtgcatcataaagaagatctaacacatacgaataaaatcataggtgaatatagaataataatgactacca |
20082330 |
T |
|
| Q |
195 |
ttcaaagaagatgttctttgtgggcctgcaatgtcagtatgaattaattgcaactt |
250 |
Q |
| |
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| ||||||| |||| ||||||||| |||||||||| ||||||||| ||||||||| |
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| T |
20082331 |
tccaaagaaagtgttatttgtgggcttgcaatgtcaatatgaattatttgcaactt |
20082386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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