View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_94 (Length: 251)
Name: NF5418_low_94
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_94 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16395873 - 16395652
Alignment:
| Q |
1 |
aaaccttccggaattgtggaaactaccttctctaaagtatctaaacatatccaacatgatccatgttacctacctattccccgagtcatatgatggagaa |
100 |
Q |
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| T |
16395873 |
aaaccttccggagttgtggaaactaccttctctaaagtatctaaaattatccaacatgatccatgttatctacctattccacgagtcatatgatggagaa |
16395774 |
T |
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| Q |
101 |
ggtttattggccttgaaaactctttacttggaggagttgccaaacctgataaaattatcaagggaagaaggagaaaatatgtttccaaaccttaaagtac |
200 |
Q |
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| T |
16395773 |
ggtttaatggctttgaaaactcttttcttggagaagttgccaaaccttatagggttatcaagggaagaaagagta---atgtttccgcgtcttaaagcac |
16395677 |
T |
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| Q |
201 |
ttcaaatatctgaatgtcctaattt |
225 |
Q |
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|| |||| |||||||||||||||| |
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| T |
16395676 |
ttgaaatcactgaatgtcctaattt |
16395652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 15454362 - 15454565
Alignment:
| Q |
22 |
actaccttctctaaagtatctaaacatatccaacatgatccatgttacctacctattccccgagtcatatgatggagaaggtttattggccttgaaaact |
121 |
Q |
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||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||| | || |||||||||||||||||| |||| | ||| || |
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| T |
15454362 |
actaccttctctaaagtatctaagaatatcaaatatgatccatattacctacctatttgaggtatcttatgatggagaaggtttaatggctctaaaatct |
15454461 |
T |
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| Q |
122 |
ctttacttggaggagttgccaaacctgataaaattatcaagggaagaaggagaaaatatgtttccaaaccttaaagtacttcaaatatctgaatgtccta |
221 |
Q |
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|||| ||||||| ||||||||| ||||||||| |||||||||||||| |||||||||| |||| |||||||| |||| |||| |||||||||||| |
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| T |
15454462 |
cttttcttggagaagttgccaagcctgataaagctatcaagggaagaaaccaaaaatatgttcccaagccttaaagcacttgaaatcactgaatgtccta |
15454561 |
T |
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| Q |
222 |
attt |
225 |
Q |
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|||| |
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| T |
15454562 |
attt |
15454565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 16402465 - 16402401
Alignment:
| Q |
1 |
aaaccttccggaattgtggaaactaccttctctaaagtatctaaacatatccaacatgatccatg |
65 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16402465 |
aaaccttccggaattgtggaaactaccttctctaaagtatctaaacatatccaacatgatccatg |
16402401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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