View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5418_low_96 (Length: 250)
Name: NF5418_low_96
Description: NF5418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5418_low_96 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: scaffold0586 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 10266 - 10082
Alignment:
| Q |
51 |
caaattgtgcacagagatataacattgaacatcatactacttgactttgattatgtaccacatcttgcagattttaactatcaagttgctaagctttaac |
150 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10266 |
caaattgtgcacagagatataacattgaacatcatactacttgacttagattatgtaccacatcttgcagattttcactatcaagttgctaagctttaac |
10167 |
T |
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| Q |
151 |
aatacaactaggagctcagttgttgtatcctatggctacacggttccaggtacacaatgtatttaattattgagattatgagcac |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
10166 |
aatacaactaggagctcagttgttgtatcctatggctacacggttccaagtacacaatgtatttaatgattgagattatgagcac |
10082 |
T |
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Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 22902569 - 22902386
Alignment:
| Q |
19 |
ggaatatcatgatggaaaaaacaaaagaatgccaaattgtgcacagagatataacattgaacatcatactacttgactttgattatgtaccacatcttgc |
118 |
Q |
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| T |
22902569 |
ggaatatcatgatggaaaaaacaaaagaatgtcaaattgtgcacagagatataacattgaacatcatactacttgacttagattatgtaccacatcttac |
22902470 |
T |
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| Q |
119 |
agattttaactatcaagttgctaagctttaacaatacaactaggagctcagttgttgtatcctatggctacacggttccaggta |
202 |
Q |
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| T |
22902469 |
agattttcactatcaaattgctaagttttaacaatacaactaggagctcagttgttgtatcctatggctacacggttccaggta |
22902386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 22894338 - 22894296
Alignment:
| Q |
193 |
gttccaggtacacaatgtatttaattattgagattatgagcac |
235 |
Q |
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| T |
22894338 |
gttccaggtacacaatgtatttaatgattgagattatgagcac |
22894296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 26662308 - 26662125
Alignment:
| Q |
21 |
aatatcatgatggaaaaaacaaaagaatgccaaattgtgcacagagatataacattgaacatcatactacttgactttgattatgtaccacatcttgcag |
120 |
Q |
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| T |
26662308 |
aatatcatgatggaaa---caaaagaatgtcaaattatgcacaaagatgtaacattgaacatcatactacttgacttagattatgtaccacatcttgcag |
26662212 |
T |
|
| Q |
121 |
attttaactatcaagttgctaagctttaacaatacaactaggagctcagttgttgtatcctatggctacacggttccaggtacacaa |
207 |
Q |
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| T |
26662211 |
attttcactatcaagttactaagctttaacaatacaactaggagctcagttgatgtatcctatggctacatggttctagatacacaa |
26662125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 32717339 - 32717483
Alignment:
| Q |
91 |
ttgactttgattatgtaccacatcttgcagattttaactatcaagttgctaagctttaacaatacaactaggagctcagttgttgtatcctatggctaca |
190 |
Q |
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||||||| ||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32717339 |
ttgacttagattatgtaccacatcttgcatattctcactatcaagttgttaagctttaacaatacaactaggagctcaattgttgtatcctatggctaca |
32717438 |
T |
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| Q |
191 |
cggttccaggtacacaatgtatttaattattgagattatgagcac |
235 |
Q |
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| T |
32717439 |
cggttccaggtacacaatgtatttaatgattgagattatgagcac |
32717483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 10638272 - 10638129
Alignment:
| Q |
91 |
ttgactttgattatgtaccacatcttgcagattttaactatcaagttgctaagctttaacaatacaactaggagctcagttgttgtatcctatggctaca |
190 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10638272 |
ttgacttagattatgtaccacatcttgcagattttcactatcaaattgctaagttttaacaatacaactaggagctcagttgttgtatcctatggctaca |
10638173 |
T |
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| Q |
191 |
cggttccaggtacacaatgtatttaattattgagattatgagcac |
235 |
Q |
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||||||||||||||||||| | ||||| ||||||||||||||||| |
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| T |
10638172 |
cggttccaggtacacaatgca-ttaatgattgagattatgagcac |
10638129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 19702548 - 19702429
Alignment:
| Q |
19 |
ggaatatcatgatggaaaaaacaaaagaat-gccaaattgtgcacagagatataacattgaacatcatactacttgactttgattatgtaccacatcttg |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
19702548 |
ggaatatcatgatggaaaaaacaaaagaattgccaaattgtgcacagagatataacattgaacatcatactacttgtcttagattatgtaccacatcttg |
19702449 |
T |
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| Q |
118 |
cagattttaactatcaagtt |
137 |
Q |
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| T |
19702448 |
cagattttcactatcaagtt |
19702429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 19701756 - 19701654
Alignment:
| Q |
133 |
aagttgctaagctttaacaatacaactaggagctcagttgttgtatcctatggctacacggttccaggtacacaatgtatttaattattgagattatgag |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||| |||| |
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| T |
19701756 |
aagttgctaagctttaacaatacaactaggagctcagttgttgtatgctattactacatggttccaggtacacaatgtatttaatgattgagattttgag |
19701657 |
T |
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| Q |
233 |
cac |
235 |
Q |
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||| |
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| T |
19701656 |
cac |
19701654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 38935585 - 38935407
Alignment:
| Q |
53 |
aattgtgcacagagatataacattgaacatcatactacttgactttgattatgtaccacatcttgcagatttt--aactatcaagttgctaagctttaac |
150 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||| ||| ||| |||||| || |||| |
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| T |
38935585 |
aattgtgcacagagatataacattgaataacatactacttgactcagattatgtacctcatcttgcagattttggcactgcaaagctgctaaactctaac |
38935486 |
T |
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| Q |
151 |
aatacaactaggagctcagttgttgtatcctatggctacacggttccaggtacacaatgtatttaattattgagattat |
229 |
Q |
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||| | ||| ||| |||||||| | |||||||||||||| || ||||||||||||||| |||||| ||||||||||| |
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| T |
38935485 |
aattcgacttggacctcagttgccggatcctatggctacatggctccaggtacacaatgcatttaacgattgagattat |
38935407 |
T |
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