View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5419-Insertion-1 (Length: 935)
Name: NF5419-Insertion-1
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5419-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 8 - 611
Target Start/End: Complemental strand, 40208425 - 40207825
Alignment:
| Q |
8 |
ccttcaagatttcgagtttagattaaactttcaactatataaattacatgcacaatattcagtcaaaaatagaacttgaaacggcaaaatcttctaacag |
107 |
Q |
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| T |
40208425 |
ccttcaagatttcgagtttagattaaactttcaactatataaattacatgcacaatattcagtcaaaaatagaacttgaaacggcaaaatcttctaacag |
40208326 |
T |
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| Q |
108 |
caatttgagctggacacaagaatgtacaaaatctatcaagataatnnnnnnnngtattaaaattcatagatatcatttttcagggacacttaattttgga |
207 |
Q |
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| T |
40208325 |
caatttgagctggacacaagaatgtacaaaatctatcaagataataaaaaaaa-tattaaaattcatagatatcatttttcagggacacttaattttgga |
40208227 |
T |
|
| Q |
208 |
cgatgttcatcgatccagcaaccagtcactgatgcaaatgataccatcatccacacaaccaatgcccaaggaattgtcttattattcaaccccccaaaaa |
307 |
Q |
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| T |
40208226 |
cgatgttcatcgatccagcaaccagtcactgatgcaaatgataccatcatccacacaaccaatgcccaaggaattgtcttattattcaaccccccaaaaa |
40208127 |
T |
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| Q |
308 |
ccaagaatttatataaagnnnnnnnncataaaaacacataaccaacactgttccatgtataaatatttctttgtttttcccttggcttctgaagtcgtag |
407 |
Q |
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| T |
40208126 |
cccagaatttatataaagaaaaaaaacataaaaacacataaccaacactgttccatgtataaatatttatttgcttttcccttggcttctgaagtcgtag |
40208027 |
T |
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| Q |
408 |
gtagttcttgtacataggcttttgcaaattgatccatgtcttccctttactaattttcttcaaaaccaaactgcaaaaagctt-ttttattttaaaattt |
506 |
Q |
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| T |
40208026 |
gtaggtcttgaacataggcttttgcaaattgatccatgtcttccctttactaattttcttcaaaaccaaactgcaaaaagctttttttattttaaaattt |
40207927 |
T |
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| Q |
507 |
taattataactccatttccctcagcactttcagccaagtcttgttgtaaactataattcaacctcaacagattctctcaattataatatgtcaaaggacc |
606 |
Q |
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| T |
40207926 |
taattataactccatttccctcagcactttcagccaagtc---ttgtaaactataattcaccctcaacagattctctcaattataatatgtcaaaggacc |
40207830 |
T |
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| Q |
607 |
aaatt |
611 |
Q |
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||||| |
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| T |
40207829 |
aaatt |
40207825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 698 - 929
Target Start/End: Complemental strand, 40207721 - 40207495
Alignment:
| Q |
698 |
cctcctcctcccccgttcgcttggtcaacaactcattcttccaaagaatgagtgtttggacgatagagatcataaggtgcccataggtgatcaacagaac |
797 |
Q |
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| T |
40207721 |
cctcctcctcccccgttcgctttgtcaacaactcattcttccaaagaatgagtgtttggaccatagagatcataaggtgcccataggtgatcaacagaa- |
40207623 |
T |
|
| Q |
798 |
caaggtctccttgaatccaacctcaaccaaggctttcctttgccacttcaaatgaagcaaactaataggaccaggatgcaaattcctacattttcctttc |
897 |
Q |
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| T |
40207622 |
caaggtctccttgaatccaacctcaaccaaggctttcctttgccac-tccaatgaagcaaactaataggaccaggatgcaaattcctacattttcc-ttc |
40207525 |
T |
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| Q |
898 |
aagataatcaccctccaagtccggtgttgatt |
929 |
Q |
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| T |
40207524 |
aagattatca-cctccaagtcc-gtgttgatt |
40207495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 630 - 666
Target Start/End: Complemental strand, 40207806 - 40207770
Alignment:
| Q |
630 |
tattaagaaatgaaattgttaaaattactcacctctt |
666 |
Q |
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| T |
40207806 |
tattaagaaatgaaattgttaaaagtactcacctctt |
40207770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 753 - 895
Target Start/End: Original strand, 37500684 - 37500824
Alignment:
| Q |
753 |
ttggacgatagagatcataaggtgcccataggtgatcaacagaaccaaggtctccttgaatccaacctcaaccaaggctttcctttgccacttcaaatga |
852 |
Q |
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|||||||||||||||| ||||||||||| || |||||||| ||| ||||| |||| ||||||||||| |||||||| || || || |||| || ||||| |
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| T |
37500684 |
ttggacgatagagatcgtaaggtgcccaaagatgatcaacggaa-caaggattcctcgaatccaaccttaaccaaggtttacccttcccac-tccaatga |
37500781 |
T |
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| Q |
853 |
agcaaactaataggaccaggatgcaaattcctacattttcctt |
895 |
Q |
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| T |
37500782 |
agcaaactaacaggcccaggatgaagactcctacatttacctt |
37500824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 805 - 895
Target Start/End: Original strand, 48999151 - 48999240
Alignment:
| Q |
805 |
tccttgaatccaacctcaaccaaggctttcctttgccacttcaaatgaagcaaactaataggaccaggatgcaaattcctacattttcctt |
895 |
Q |
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|||||||||||||||||||||| || || ||||| |||| || |||| | ||||||||||||||||| || ||| | |||||||| |||| |
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| T |
48999151 |
tccttgaatccaacctcaaccatggtttaccttttccac-tccaatgcaataaactaataggaccagggtgtaaacttctacatttacctt |
48999240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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