View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5419-Insertion-2 (Length: 930)
Name: NF5419-Insertion-2
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5419-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 713; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 8 - 814
Target Start/End: Complemental strand, 6616483 - 6615683
Alignment:
| Q |
8 |
ctcatatggtggctgccccaaaatcaactcttggaaattggatgaatgagattcgtcgcttttgtcctattctgcgtgccgtaaaattccttggcaaccc |
107 |
Q |
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| T |
6616483 |
ctcatatggtggttgccccaaaatcaactcttggaaattggatgaatgagattcgtcgcttttgtcctattctgcgtgccgtaaaattccttggcaaccc |
6616384 |
T |
|
| Q |
108 |
tgaagaaagggtatgacctgctttttcgggtttaattattttggcaatagtaacagttgatgcatatttatagcacttgtttgtaaacgggtttaaatta |
207 |
Q |
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| T |
6616383 |
tgaagaaagggtatgacctgctttttcgggtttaattattttggcaatagtaacagttgatgcatatttataacacttgtttgtaaacgggtttaaatta |
6616284 |
T |
|
| Q |
208 |
ctgcagagacatataagagaggacttattggttgctggaaagtttgacgtttgtgttacaagttttgaaatggctatcaaggagaagtccactctacgtc |
307 |
Q |
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| T |
6616283 |
ctgcagagacatataagagaggacttattggttgctggaaagtttgacgtttgcgttacaagttttgaaatggctatcaaggagaagtccactttacgtc |
6616184 |
T |
|
| Q |
308 |
gatttagttggcgctacataattatcgatgaagctcatagaatcaagaacgagaattcattgctctctaaaacaatgaggatttacaatacaaactatcg |
407 |
Q |
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| T |
6616183 |
gatttagttggcgctacataattatcgatgaagctcatagaatcaagaacgagaattcattgctctctaaaacaatgaggatttacaatacaaactatcg |
6616084 |
T |
|
| Q |
408 |
cctccttatcactggtacaccgcttcaggtatggtatattgtattataatgatgcggaagaattgtattttcattttttataattcaattcagcgaacca |
507 |
Q |
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| T |
6616083 |
cctccttatcactggtacaccgcttcaggtatggtatattgtattataatgatgc-gaagaattgtattttcattttttataattcaattcagcgaacca |
6615985 |
T |
|
| Q |
508 |
ttctaaatgtggaagtagttccatgccagttttcttagtgcaatcattattggtatgatgtcatctattcaatctcattaaatcatcaaatggagaaact |
607 |
Q |
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| T |
6615984 |
ttctaaatatggaagtagttccatgccagttttcttagtgcaatcattattggtatgatgtcatctattcaatctcattaaatcttcaaatggagaaact |
6615885 |
T |
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| Q |
608 |
gttagaagtgttggagggtgtggctgcattgctaaatttctaatcgtggctatttttatacaacttcattggg-ggcagtagggcctggcccaattttga |
706 |
Q |
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| T |
6615884 |
gttagaagtgttggagggtgtggctgcattgctaaatttctaatcgtggctatttttatacaacttcattgggttgcagtaggccc--ggccaattttga |
6615787 |
T |
|
| Q |
707 |
ttattttgtttcttcattttttgggtaaaacggatttgagtgagcattagtgtattaagaaacagaaactgtattacagtaagggaaggagagtttaaaa |
806 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
6615786 |
tta-tttgtttcttca-tttttgggtaaaacggatttgagtgagcattagtgtattaag-aacagaaactgtattacagtaagggaa-gagagtttaaaa |
6615691 |
T |
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| Q |
807 |
attccagt |
814 |
Q |
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|||||||| |
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| T |
6615690 |
attccagt |
6615683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 199 - 439
Target Start/End: Original strand, 49254241 - 49254481
Alignment:
| Q |
199 |
tttaaattactgcagagacatataagagaggacttattggttgctggaaagtttgacgtttgtgttacaagttttgaaatggctatcaaggagaagtcca |
298 |
Q |
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||||||| ||| |||| ||||||| |||||| |||||||| |||||||| ||||| || ||||| |||||||||||||||| ||||||||||| ||| |
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| T |
49254241 |
tttaaataactacagaagcatataaaagaggagttattggtggctggaaaatttgatgtgtgtgtgacaagttttgaaatggtaatcaaggagaaaccca |
49254340 |
T |
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| Q |
299 |
ctctacgtcgatttagttggcgctacataattatcgatgaagctcatagaatcaagaacgagaattcattgctctctaaaacaatgaggatttacaatac |
398 |
Q |
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| T |
49254341 |
cattccgtcgatttagttggcgttatgttattattgatgaagcccatcggataaaaaatgagaactccctcctgtccaaaacaatgagggaatataaaac |
49254440 |
T |
|
| Q |
399 |
aaactatcgcctccttatcactggtacaccgcttcaggtat |
439 |
Q |
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| T |
49254441 |
aaactaccgactccttataactggcacaccgctacaggtat |
49254481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 49254059 - 49254123
Alignment:
| Q |
10 |
catatggtggctgccccaaaatcaactcttggaaattggatgaatgagattcgtcgcttttgtcc |
74 |
Q |
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| T |
49254059 |
catatggttgttgctccaaaatccactcttggaaattggatgaatgagattcgacgcttttgtcc |
49254123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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