View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5419-Insertion-3 (Length: 825)
Name: NF5419-Insertion-3
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5419-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 32 - 432
Target Start/End: Complemental strand, 12199138 - 12198751
Alignment:
| Q |
32 |
tttgaacgggttaagttcgctcaatttcaaataaacgactttaagaatgaaattcagnnnnnnnnnnnnctttctatttttaagaggaagagtcatgtta |
131 |
Q |
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| T |
12199138 |
tttgaacgggttaagttcgctcaatttcaaatagacgattttaagaatgaaattcaattt----------tttttttttttatgaggaagagtcatgtta |
12199049 |
T |
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| Q |
132 |
ccaactctctcaacattatattggtttgacgcttaattttctaatgtttcaaataaaaactatacaaaaataagagttgtgaatatggccttggggctgc |
231 |
Q |
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| T |
12199048 |
ccaactctctcaatattatgttggtttgacgcttaattttctaatgtttcaaataaaaactatacaaaaataggagttgtgaatatggccc-ggggctgc |
12198950 |
T |
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| Q |
232 |
aaaccaactagtttaactcgcggcccaaggtggagaaagaccaatatgtttcacaccatttttgttttggttcacataaggtggattgcttaatcgtagg |
331 |
Q |
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| T |
12198949 |
aaaccaactagtttaactcgcggcccaaggtggataaagaccaatatgtttcacaccattttcgttttggttcacataaggtggattgcttaatcgtagg |
12198850 |
T |
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| Q |
332 |
ttatgcggtttaaatatatgcgggtttgtatgtgatgtttatgggttttttcttacttccggatttacaaccaacactataaaacataaaattataaaat |
431 |
Q |
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| T |
12198849 |
ttatgcggtttaa--atatgcgggtttgtatgtgatgtttatgagttttttcttactttggtatttacaaccaacactttaaaacataaaattataaaat |
12198752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 519 - 788
Target Start/End: Complemental strand, 12198668 - 12198415
Alignment:
| Q |
519 |
aaaatagtctaaaatctaaataaccatagaccaacaccagcagacactcatatgaatatattctcaacttcattattttcttggataggagcaaattaag |
618 |
Q |
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| T |
12198668 |
aaaatagtctaaaatctaaataaccatagaccaacac-atcagacactcatatgaatatat-ctcaacttcattattttcttggatag-agcaaattaag |
12198572 |
T |
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| Q |
619 |
gcagaacggaacaaaaacggtatatcaggtctctgccaattaacatttattattaagcttggaggtgtaatttattggagattttctagggtaatttaac |
718 |
Q |
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| T |
12198571 |
-cagaacggaacaaaac--gtatattag-tgtctgcaaattaacatt-attattaa-cttgtag-tgtaatttattgaatattttctagtgtaattt-at |
12198480 |
T |
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| Q |
719 |
cggatatttaggtatttactttattggcatttagttataaaatattttttggcacatatcaataatcaaa |
788 |
Q |
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| T |
12198479 |
tgtatattt-tgtatttactttatt-gcatttggttat-aaata-tttttggcacatatc-ataatcaaa |
12198415 |
T |
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