View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5419-Insertion-5 (Length: 691)

Name: NF5419-Insertion-5
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5419-Insertion-5
NF5419-Insertion-5
[»] chr8 (4 HSPs)
chr8 (7-594)||(26294553-26295119)
chr8 (7-594)||(26307810-26308376)
chr8 (7-588)||(26341890-26342450)
chr8 (453-591)||(26341754-26341891)
[»] scaffold0438 (3 HSPs)
scaffold0438 (7-588)||(12051-12611)
scaffold0438 (131-594)||(8931-9373)
scaffold0438 (453-591)||(11915-12052)
[»] chr5 (2 HSPs)
chr5 (452-568)||(33953647-33953759)
chr5 (7-111)||(33953552-33953648)
[»] chr3 (17 HSPs)
chr3 (14-181)||(1188678-1188847)
chr3 (31-155)||(147612-147733)
chr3 (46-150)||(1206321-1206421)
chr3 (21-205)||(1303207-1303376)
chr3 (72-205)||(1205737-1205866)
chr3 (200-272)||(8031884-8031956)
chr3 (14-214)||(5358697-5358891)
chr3 (396-457)||(1301795-1301856)
chr3 (522-594)||(5359447-5359520)
chr3 (120-181)||(1301246-1301307)
chr3 (136-205)||(1188107-1188176)
chr3 (21-65)||(1188205-1188249)
chr3 (522-578)||(7421084-7421140)
chr3 (267-324)||(8031972-8032028)
chr3 (406-458)||(1187758-1187810)
chr3 (238-268)||(5358917-5358947)
chr3 (404-457)||(482401-482454)


Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 7 - 594
Target Start/End: Complemental strand, 26295119 - 26294553
Alignment:
Q  7 agaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26295119 agaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtt 26295020  T
Q  107 taccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaag 206  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26295019 tgccaaacaaataaataaatcatcaagaaaaaagaacgttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaag 26294920  T
Q  207 tcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaaaatttaagcacgtgtgatttattttgtgcacaagtctt 306  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26294919 tcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaaaatttaagcacatgtgatttattttgtgcacaagtctt 26294820  T
Q  307 ctgtctttgtgattcaagnnnnnnnnnnnnnnnnnttcatgagcaagagcatatcttaaagttgcagagcatctatgaggtctataagttaattctatca 406  Q
    ||||||||||||||||||                 || |||||||||||||||||| |||||||| |||||||||||||                    |    
T  26294819 ctgtctttgtgattcaagacacacacatacacacattaatgagcaagagcatatctcaaagttgcggagcatctatgag--------------------a 26294740  T
Q  407 agctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatcaaattccattaccattatacac 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  26294739 agctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatc-aattccattaccattacacac 26294641  T
Q  507 attctagtattattaattagttctttatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaaccttcaa 594  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26294640 attctagtattattaattagttctctatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaaccttcaa 26294553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 7 - 594
Target Start/End: Complemental strand, 26308376 - 26307810
Alignment:
Q  7 agaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26308376 agaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtt 26308277  T
Q  107 taccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaag 206  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26308276 tgccaaacaaataaataaatcatcaagaaaaaagaacgttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaag 26308177  T
Q  207 tcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaaaatttaagcacgtgtgatttattttgtgcacaagtctt 306  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26308176 tcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaaaatttaagcacatgtgatttattttgtgcacaagtctt 26308077  T
Q  307 ctgtctttgtgattcaagnnnnnnnnnnnnnnnnnttcatgagcaagagcatatcttaaagttgcagagcatctatgaggtctataagttaattctatca 406  Q
    ||||||||||||||||||                 || |||||||||||||||||| |||||||| |||||||||||||                    |    
T  26308076 ctgtctttgtgattcaagacacacacatacacacattaatgagcaagagcatatctcaaagttgcggagcatctatgag--------------------a 26307997  T
Q  407 agctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatcaaattccattaccattatacac 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  26307996 agctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatc-aattccattaccattacacac 26307898  T
Q  507 attctagtattattaattagttctttatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaaccttcaa 594  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26307897 attctagtattattaattagttctctatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaaccttcaa 26307810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 7 - 588
Target Start/End: Complemental strand, 26342450 - 26341890
Alignment:
Q  7 agaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26342450 agaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtt 26342351  T
Q  107 taccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaag 206  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26342350 tgccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaag 26342251  T
Q  207 tcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaaaatttaagcacgtgtgatttattttgtgcacaagtctt 306  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26342250 tcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaaaatttaagcacatgtgatttattttgtgcacaagtctt 26342151  T
Q  307 ctgtctttgtgattcaagnnnnnnnnnnnnnnnnnttcatgagcaagagcatatcttaaagttgcagagcatctatgaggtctataagttaattctatca 406  Q
    ||||||||||||||||||                 || |||||||||||||||||| |||||||| |||||||||||||                    |    
T  26342150 ctgtctttgtgattcaagacacacacatacacacattaatgagcaagagcatatctcaaagttgcggagcatctatgag--------------------a 26342071  T
Q  407 agctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatcaaattccattaccattatacac 506  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  26342070 agctactctttcatgcgattcaagttgcatgcatgcaagcaaacacacacattcatgtaaatacattcaaggaaaatc-aattccattaccattacacac 26341972  T
Q  507 attctagtattattaattagttctttatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaac 588  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26341971 attctagtattattaattagttctttatttctatcttcttctacatataacaattatttctattttcctttctttcaccaac 26341890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 453 - 591
Target Start/End: Complemental strand, 26341891 - 26341754
Alignment:
Q  453 acacattcatgtaaatacattcaaggaaaatcaaattccattaccattatacacattctagtattattaattagttctttatttctatcttcttcaacat 552  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26341891 acacattcatgtaaatacattcaaggaaaatcaa-ttccattaccattacacacattctagtattattaattagttctttatttctatcttcttcaacat 26341793  T
Q  553 ataacaattatttctattttcctttctttcaccaacctt 591  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26341792 ataacaattatttctattttcctttctttcaccaacctt 26341754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 7 - 588
Target Start/End: Complemental strand, 12611 - 12051
Alignment:
Q  7 agaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12611 agaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtt 12512  T
Q  107 taccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaag 206  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12511 tgccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaag 12412  T
Q  207 tcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaaaatttaagcacgtgtgatttattttgtgcacaagtctt 306  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12411 tcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaaaatttaagcacatgtgatttattttgtgcacaagtctt 12312  T
Q  307 ctgtctttgtgattcaagnnnnnnnnnnnnnnnnnttcatgagcaagagcatatcttaaagttgcagagcatctatgaggtctataagttaattctatca 406  Q
    ||||||||||||||||||                 || |||||||||||||||||| |||||||| |||||||||||||                    |    
T  12311 ctgtctttgtgattcaagacacacacatacacacattaatgagcaagagcatatctcaaagttgcggagcatctatgag--------------------a 12232  T
Q  407 agctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatcaaattccattaccattatacac 506  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  12231 agctactctttcatgcgattcaagttgcatgcatgcaagcaaacacacacattcatgtaaatacattcaaggaaaatc-aattccattaccattacacac 12133  T
Q  507 attctagtattattaattagttctttatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaac 588  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12132 attctagtattattaattagttctttatttctatcttcttctacatataacaattatttctattttcctttctttcaccaac 12051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 131 - 594
Target Start/End: Complemental strand, 9373 - 8931
Alignment:
Q  131 aagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaagtcaaagcaataaattcaagagact 230  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  9373 aagaaaaaagaacgttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaagtcaaagcaataaaatctagagact 9274  T
Q  231 attctagaaaaatgcaaaggaattagacacaagattaaaatttaagcacgtgtgatttattttgtgcacaagtcttctgtctttgtgattcaagnnnnnn 330  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          
T  9273 attctagaaaaatgcaaaggaattatacacaagattaaaatttaagcacatgtgatttattttgtgcacaagtcttctgtctttgtgattcaagacacac 9174  T
Q  331 nnnnnnnnnnnttcatgagcaagagcatatcttaaagttgcagagcatctatgaggtctataagttaattctatcaagctactctttcatgcgattcaag 430  Q
               || |||||||||||||||||| |||||||| |||||||||||||                    |||||||||||||||||||||||||    
T  9173 acatacacacattaatgagcaagagcatatctcaaagttgcggagcatctatgag--------------------aagctactctttcatgcgattcaag 9094  T
Q  431 ttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatcaaattccattaccattatacacattctagtattattaattagttct 530  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  9093 ttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatc-aattccattaccattacacacattctagtattattaattagttct 8995  T
Q  531 ttatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaaccttcaa 594  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8994 ctatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaaccttcaa 8931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 453 - 591
Target Start/End: Complemental strand, 12052 - 11915
Alignment:
Q  453 acacattcatgtaaatacattcaaggaaaatcaaattccattaccattatacacattctagtattattaattagttctttatttctatcttcttcaacat 552  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12052 acacattcatgtaaatacattcaaggaaaatcaa-ttccattaccattacacacattctagtattattaattagttctttatttctatcttcttcaacat 11954  T
Q  553 ataacaattatttctattttcctttctttcaccaacctt 591  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11953 ataacaattatttctattttcctttctttcaccaacctt 11915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 6e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 452 - 568
Target Start/End: Original strand, 33953647 - 33953759
Alignment:
Q  452 cacacattcatgtaaatacattcaaggaaaatcaaattccattaccattatacacattctagtattattaattagttctttatttctatcttcttcaaca 551  Q
    |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||   ||||||||||||||||||||||||||    
T  33953647 cacacattcatggaaatacattcaaggaaaatcaa-ttccattagcattatacacattctagtattaataa---gttctttatttctatcttcttcaaca 33953742  T
Q  552 tataacaattatttcta 568  Q
    |||||||||||||||||    
T  33953743 tataacaattatttcta 33953759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 33953552 - 33953648
Alignment:
Q  7 agaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtt 106  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||| ||||||||||||||||||||||||||| | ||||||||    
T  33953552 agaaattacacactgttaagttaaggaacttgtattaac--------aaattcatattacaagccttgcatgaactcaaacaagctgttgatttttagtt 33953643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 1188847 - 1188678
Alignment:
Q  14 acacactgttaagttaa-----ggaacttgtattaac-tttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagttt 107  Q
    |||||||||||||||||     ||||||||||||||| ||||||||| ||||| ||||  |||||||||||||||||||| ||||||||| |||||||||    
T  1188847 acacactgttaagttaattccaggaacttgtattaacctttccaacacattcacattattggccttgcatgaactcaaacgagctgttcatttttagttt 1188748  T
Q  108 accaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggac 181  Q
    |||| ||    |||||||||||||||||||||||||||||||| ||  |||||| ||||||| | |||||||||    
T  1188747 accagac----aaataaatcatcaagaaaaaagaaagttaatcgttcagacaatttcttcaaaagtttaaggac 1188678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 147733 - 147612
Alignment:
Q  31 ggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtttaccaaacaaataaataaatcatc 130  Q
    ||||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||| |||| ||||||||||||| ||    ||||||||||||    
T  147733 ggaacttgtattaactttcaaacaaattcatattataggtcctgcatgaactcaaacaagcttttcatttttagtttaccagac----aaataaatcatc 147638  T
Q  131 aag-aaaaaagaaagttaatcctttt 155  Q
    ||| |||||| |||||||||||||||    
T  147637 aagaaaaaaataaagttaatcctttt 147612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 1206421 - 1206321
Alignment:
Q  46 tttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtttaccaaacaaataaataaatcatcaagaaaaaagaaagt 145  Q
    ||||||||| ||||| ||||  ||||||||||||||||||||||| |||||| ||||||||||||| ||    |||||||||||||||||||||||||||    
T  1206421 tttccaacacattcacattattggccttgcatgaactcaaacaagttgttcatttttagtttaccagac----aaataaatcatcaagaaaaaagaaagt 1206326  T
Q  146 taatc 150  Q
    |||||    
T  1206325 taatc 1206321  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 1303207 - 1303376
Alignment:
Q  21 gttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtttaccaaacaaataa 120  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||   || |||||||||| ||||||||||||| | ||||| || |||| ||||||||    
T  1303207 gttaagttcaggaacttgtattaactttccaacaaattcaaattatgagctttgcatgaacacaaacaagctgttgatttttatttaaccagacaaataa 1303306  T
Q  121 ataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaa 205  Q
    ||               |||||| |||||||||  |||||||||| ||||||||||||| ||| |||||||| ||||||||||||    
T  1303307 at---------------aagaaatttaatccttcagacaatatctccaataatttaaggtctatatctcacataccaaacagaaa 1303376  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 1205866 - 1205737
Alignment:
Q  72 ttgcatgaactcaaacaagctgttcaattttagtttaccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaata 171  Q
    |||||||||| ||||||||||||| | ||||| || |||| ||||||||||    |||||| ||| |||||| |||||||||  |||||||||| |||||    
T  1205866 ttgcatgaacacaaacaagctgttgatttttatttaaccagacaaataaat----catcaataaataagaaatttaatccttcagacaatatctccaata 1205771  T
Q  172 atttaaggactacatctcacacaccaaacagaaa 205  Q
    |||||||| ||| |||||||| ||||||||||||    
T  1205770 atttaaggtctatatctcacataccaaacagaaa 1205737  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 8031884 - 8031956
Alignment:
Q  200 cagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaaaatt 272  Q
    |||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||    
T  8031884 cagacagtcaaagctataaattcacaagactattctagaaaaatgcaaaggaattagacacaagattataatt 8031956  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 5358697 - 5358891
Alignment:
Q  14 acacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtttaccaaa 113  Q
    ||||||||||||||  |  ||||||||| |  ||||||||||||||| ||||   ||||| |  |||||||||||||||| | ||||||  ||||||| |    
T  5358697 acacactgttaagtccaacaacttgtatcatatttccaacaaattcagattatgagccttactagaactcaaacaagctggt-aatttttatttaccaga 5358795  T
Q  114 caaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaagtcaaagc 213  Q
    |    || |||||||||||||| |||||||| ||||| ||  | ||| |||||||| ||||||| ||||| ||||||||||||||||||||| |||||||    
T  5358796 c----aagtaaatcatcaagaacaaagaaagctaatcattcag-caacatcttcaacaatttaaagactatatctcacacaccaaacagaaaatcaaagc 5358890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 1301795 - 1301856
Alignment:
Q  396 taattctatcaagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacaca 457  Q
    |||||| ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  1301795 taattcaatcaagctactctatcatgtgattcaagttgtatgcatgcaaacaaacacacaca 1301856  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 522 - 594
Target Start/End: Original strand, 5359447 - 5359520
Alignment:
Q  522 attagttctttatttctatcttcttcaacatataacaattatttctattttccttt-ctttcaccaaccttcaa 594  Q
    |||||||||||||| |||| ||||||||| |||||||||||||||||| ||||||| || ||||||||||||||    
T  5359447 attagttctttattcctatattcttcaacgtataacaattatttctatcttcctttcctctcaccaaccttcaa 5359520  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 1301246 - 1301307
Alignment:
Q  120 aataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggac 181  Q
    ||||||||||||||||||||||||||||||| ||  |||||| |||||||||| ||||||||    
T  1301246 aataaatcatcaagaaaaaagaaagttaatcgttcagacaatttcttcaataacttaaggac 1301307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 1188176 - 1188107
Alignment:
Q  136 aaaagaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaa 205  Q
    |||| |||||||||||||  ||||| |||| ||||||| ||||| ||| |||||||||||||||||||||    
T  1188176 aaaaaaaagttaatccttcagacaacatctccaataatataaggtctagatctcacacaccaaacagaaa 1188107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 1188249 - 1188205
Alignment:
Q  21 gttaagttaaggaacttgtattaactttccaacaaattcatatta 65  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||    
T  1188249 gttaagttcaggaacttgtattaactttccaacaaattcagatta 1188205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 578
Target Start/End: Original strand, 7421084 - 7421140
Alignment:
Q  522 attagttctttatttctatcttcttcaacatataacaattatttctattttcctttc 578  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||||||  |||||||    
T  7421084 attagttctttattcctatcttcttaaacatataagaattatttctatcatcctttc 7421140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 8031972 - 8032028
Alignment:
Q  267 aaaatttaagcacgtgtgatttattttgtgcacaagtcttctgtctttgtgattcaag 324  Q
    ||||||||||||| | ||||||||||||||||||||| || |||| ||||||||||||    
T  8031972 aaaatttaagcacatatgatttattttgtgcacaagtattttgtc-ttgtgattcaag 8032028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 458
Target Start/End: Complemental strand, 1187810 - 1187758
Alignment:
Q  406 aagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacat 458  Q
    |||||||||| ||||| ||| ||||||||||||||| ||| ||||||||||||    
T  1187810 aagctactctatcatgtgatacaagttgcatgcatgtaaagaaacacacacat 1187758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 238 - 268
Target Start/End: Original strand, 5358917 - 5358947
Alignment:
Q  238 aaaaatgcaaaggaattagacacaagattaa 268  Q
    |||||||||||||||||||||||||||||||    
T  5358917 aaaaatgcaaaggaattagacacaagattaa 5358947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 482454 - 482401
Alignment:
Q  404 tcaagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacaca 457  Q
    |||| |||||||| |||| || ||||| |||||||||||| |||||||||||||    
T  482454 tcaaactactcttacatgtgactcaagatgcatgcatgcacacaaacacacaca 482401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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