View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5419-Insertion-6 (Length: 513)

Name: NF5419-Insertion-6
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5419-Insertion-6
NF5419-Insertion-6
[»] chr4 (3 HSPs)
chr4 (8-233)||(36286240-36286465)
chr4 (399-513)||(36286065-36286179)
chr4 (217-359)||(40823853-40823995)
[»] chr7 (16 HSPs)
chr7 (223-356)||(20284848-20284981)
chr7 (205-359)||(20243512-20243666)
chr7 (217-359)||(20263906-20264048)
chr7 (217-358)||(20168102-20168243)
chr7 (217-359)||(20303594-20303736)
chr7 (217-358)||(20279416-20279557)
chr7 (217-359)||(20289156-20289298)
chr7 (225-356)||(20294565-20294696)
chr7 (217-349)||(20231457-20231589)
chr7 (223-361)||(19939009-19939147)
chr7 (223-361)||(19970148-19970286)
chr7 (237-359)||(20273711-20273833)
chr7 (14-90)||(20289417-20289493)
chr7 (8-92)||(20303862-20303946)
chr7 (11-89)||(19939299-19939377)
chr7 (11-89)||(19970438-19970516)
[»] chr6 (2 HSPs)
chr6 (8-246)||(16872151-16872390)
chr6 (330-399)||(16654243-16654312)
[»] chr8 (15 HSPs)
chr8 (318-381)||(19348300-19348363)
chr8 (318-381)||(19379366-19379429)
chr8 (318-381)||(19500631-19500694)
chr8 (316-381)||(19454361-19454426)
chr8 (316-379)||(19551618-19551681)
chr8 (316-379)||(19581007-19581070)
chr8 (316-381)||(15943112-15943177)
chr8 (316-381)||(19407341-19407406)
chr8 (318-379)||(19526650-19526711)
chr8 (318-381)||(19415420-19415483)
chr8 (316-381)||(16006438-16006503)
chr8 (316-361)||(19149273-19149318)
chr8 (316-386)||(15963795-15963865)
chr8 (316-381)||(19187197-19187262)
chr8 (330-379)||(19399065-19399114)
[»] chr2 (5 HSPs)
chr2 (225-378)||(2707336-2707489)
chr2 (225-378)||(2723728-2723881)
chr2 (234-378)||(2745567-2745711)
chr2 (225-378)||(2717106-2717259)
chr2 (285-357)||(2712642-2712714)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 36286465 - 36286240
Alignment:
Q  8 aatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgtattctggagatatgtagcgactgcatttaaaggtcaaatgtctat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36286465 aatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgtattctggagatatgtagcgactgcatttaaaggtcaaatgtctat 36286366  T
Q  108 gctcttagtattttctactatatttgttggacaaagaggaaggcatatacttgctatgttccaataattcttcttgtcttgccattcacttcactgtctc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36286365 gctcttagtattttctactatatttgttggacaaagaggaaggcatatacttgctatgttccaacaattcttcttgtcttgccattcacttcactgtctc 36286266  T
Q  208 caaataatttagccgtaccaaaatct 233  Q
    ||||||||||||||||||||||||||    
T  36286265 caaataatttagccgtaccaaaatct 36286240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 399 - 513
Target Start/End: Complemental strand, 36286179 - 36286065
Alignment:
Q  399 tctgcacaaataattcaaagaaattaagacttaaaaatgtgtaagacaaggtgagaacattatacaataaagaaaaatatctgaaccactaaagactcat 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36286179 tctgcacaaataattcaaagaaattaagacttaaaaatgtgtaagacaaggtgagaacattatacaataaagaaaaaaatctgaaccactaaagactcat 36286080  T
Q  499 tagcatgtttcattt 513  Q
    |||||||||||||||    
T  36286079 tagcatgtttcattt 36286065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 359
Target Start/End: Original strand, 40823853 - 40823995
Alignment:
Q  217 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 316  Q
    ||||| ||||||| ||||||||||| ||||||| | | || || ||||| |||||||| | ||||| |||||| |||||||| |  ||| |  || ||||    
T  40823853 tagccataccaaagtctgatatttttggattcaactcctcgtctaacaagatgttacttgtctttagatctctgtgtataattctcaatttggaagctct 40823952  T
Q  317 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 359  Q
     |||||||| |||||||||||||| |||||||| || ||||||    
T  40823953 atgaagataaagcaatcctcgagctattccttctatgatgtta 40823995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 223 - 356
Target Start/End: Complemental strand, 20284981 - 20284848
Alignment:
Q  223 taccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaag 322  Q
    ||||||| ||||||||||| ||||||||| | ||||| ||||| |  ||||| ||||| ||||||||||| ||||| | || |||| |||||||||||||    
T  20284981 taccaaagtctgatatttttggattcagctcctcatctaacaagacattacttgccttcaaatctctatgaataattcttagtctagaatctctgtgaag 20284882  T
Q  323 atatagcaatcctcgagcaattccttcaattatg 356  Q
    |||||||||||||||||| |||||||| ||||||    
T  20284881 atatagcaatcctcgagctattccttcgattatg 20284848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 359
Target Start/End: Complemental strand, 20243666 - 20243512
Alignment:
Q  205 ctccaaataatttagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaa 304  Q
    ||||||||| | |||||  |||||| ||||||||||| ||||||| | | ||||| ||||  |  ||||| ||||| ||||||||||| ||||| | ||     
T  20243666 ctccaaatattctagccagaccaaagtctgatatttttggattcaactcctcatctaacaggacattacttgccttcaaatctctatgaataattcttag 20243567  T
Q  305 tctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgtta 359  Q
     ||| |||||||||||||||||||||| ||||||||||||||||| || ||||||    
T  20243566 cctagaatctctgtgaagatatagcaaccctcgagcaattccttctatgatgtta 20243512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 359
Target Start/End: Complemental strand, 20264048 - 20263906
Alignment:
Q  217 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 316  Q
    ||||| ||||||| ||||||||||| ||||||| | | ||||| ||||  |  ||||| ||||| ||||||||||| ||||| | ||  ||| |||||||    
T  20264048 tagccataccaaagtctgatatttttggattcaactcctcatctaacagaacattacttgccttcaaatctctatgaataattcttagcctagaatctct 20263949  T
Q  317 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 359  Q
    ||||||||||||||| ||||||||||||||||| || ||||||    
T  20263948 gtgaagatatagcaaccctcgagcaattccttctataatgtta 20263906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 217 - 358
Target Start/End: Original strand, 20168102 - 20168243
Alignment:
Q  217 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 316  Q
    ||||| ||||||| ||||||||||| ||||||| | | ||||| ||||| |  ||||| ||||| ||||||||||| ||||| | || |||  |||||||    
T  20168102 tagccataccaaattctgatatttttggattcaactcctcatctaacaagacattacttgccttcaaatctctatgaataattcttagtctggaatctct 20168201  T
Q  317 gtgaagatatagcaatcctcgagcaattccttcaattatgtt 358  Q
    ||| |||||||||||||| ||||| |||||||| ||||||||    
T  20168202 gtggagatatagcaatccacgagctattccttctattatgtt 20168243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 217 - 359
Target Start/End: Complemental strand, 20303736 - 20303594
Alignment:
Q  217 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 316  Q
    ||||| ||||||| || || ||||| ||||||||| | ||||| ||||| || ||||| | ||| |||||||| |||||||| | || |||  |||||||    
T  20303736 tagccataccaaagtcggaaatttttggattcagctcctcatctaacaagatattacttgtcttcaaatctctgtgtataattcttagtctcgaatctct 20303637  T
Q  317 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 359  Q
    ||||||||| | ||||||||||||||||||||| || ||||||    
T  20303636 gtgaagatacaacaatcctcgagcaattccttctataatgtta 20303594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 358
Target Start/End: Complemental strand, 20279557 - 20279416
Alignment:
Q  217 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 316  Q
    ||||| ||||||| ||||||||||| ||||||||| | ||||| ||||  |  ||||| ||||| |||||||| || ||||| | || |||  |||||||    
T  20279557 tagccataccaaagtctgatatttttggattcagctcctcatctaacaggacattacttgccttcaaatctctgtgaataattcttagtctggaatctct 20279458  T
Q  317 gtgaagatatagcaatcctcgagcaattccttcaattatgtt 358  Q
    |||||||||||||||||| ||||| ||||||||  |||||||    
T  20279457 gtgaagatatagcaatccgcgagctattccttctgttatgtt 20279416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 359
Target Start/End: Complemental strand, 20289298 - 20289156
Alignment:
Q  217 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 316  Q
    ||||| ||||||| ||||||||||| ||||||| | | || || ||||| |||||||| | |||||||||||| |||||||| |  ||| |  |||||||    
T  20289298 tagccataccaaagtctgatattttgggattcaactcctcgtctaacaagatgttacttgtctttaaatctctgtgtataattctcaatttggaatctct 20289199  T
Q  317 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 359  Q
     |||||||| |||||||||||||| ||||| || || ||||||    
T  20289198 atgaagataaagcaatcctcgagctattccatctataatgtta 20289156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 225 - 356
Target Start/End: Complemental strand, 20294696 - 20294565
Alignment:
Q  225 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 324  Q
    ||||| || |||||||| ||||||||| | ||||| ||||  |  ||||| ||||| ||||||||||| ||||| | ||  ||| |||||| ||||||||    
T  20294696 ccaaagtccgatatttttggattcagctcctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctcggtgaagat 20294597  T
Q  325 atagcaatcctcgagcaattccttcaattatg 356  Q
    | |||||||||||||| |||||||| ||||||    
T  20294596 acagcaatcctcgagctattccttctattatg 20294565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 217 - 349
Target Start/End: Complemental strand, 20231589 - 20231457
Alignment:
Q  217 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 316  Q
    ||||| ||||||| ||||||||||| ||||||| |   ||||| ||||  |  ||||| ||||| ||| ||||||| ||||| | ||  ||| |||||||    
T  20231589 tagccataccaaagtctgatatttttggattcaacttctcatctaacaggacattacttgccttcaaacctctatgaataattcttagcctagaatctct 20231490  T
Q  317 gtgaagatatagcaatcctcgagcaattccttc 349  Q
    ||||||||||| ||| |||||||||||||||||    
T  20231489 gtgaagatataacaaccctcgagcaattccttc 20231457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 223 - 361
Target Start/End: Complemental strand, 19939147 - 19939009
Alignment:
Q  223 taccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaag 322  Q
    ||||||| ||||||||||| ||||| ||| | | ||| | ||| || ||||| | ||| |||||||||||||||||   || |||  |||||||||| ||    
T  19939147 taccaaagtctgatatttttggattaagctcattatctagcaagatattacttggcttcaaatctctatgtataatttttagtctggaatctctgtgcag 19939048  T
Q  323 atatagcaatcctcgagcaattccttcaattatgttaaa 361  Q
    ||| | |||||||||||| |||||||| |||||| ||||    
T  19939047 atacaacaatcctcgagctattccttctattatgctaaa 19939009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 223 - 361
Target Start/End: Complemental strand, 19970286 - 19970148
Alignment:
Q  223 taccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaag 322  Q
    ||||||| ||||||||||| ||||| ||| | | ||| | ||| || ||||| | ||| |||||||||||||||||   || |||  |||||||||| ||    
T  19970286 taccaaagtctgatatttttggattaagctcattatctagcaagatattacttggcttcaaatctctatgtataatttttagtctggaatctctgtgcag 19970187  T
Q  323 atatagcaatcctcgagcaattccttcaattatgttaaa 361  Q
    ||| | |||||||||||| |||||||| |||||| ||||    
T  19970186 atacaacaatcctcgagctattccttctattatgctaaa 19970148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 359
Target Start/End: Complemental strand, 20273833 - 20273711
Alignment:
Q  237 attttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctc 336  Q
    ||||| ||||||||| | || || ||||| |  ||||| ||||| ||||||||||| ||||| | ||  ||  |||||||||||||||||| ||| ||||    
T  20273833 atttttggattcagctcctcgtctaacaagacattacttgccttcaaatctctatgaataattcttagcctggaatctctgtgaagatataacaaccctc 20273734  T
Q  337 gagcaattccttcaattatgtta 359  Q
    |||| |||||||| || ||||||    
T  20273733 gagctattccttctataatgtta 20273711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 20289493 - 20289417
Alignment:
Q  14 ccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgtattctggagatatgtagcgactgcattt 90  Q
    |||||||||||||||||  ||| ||| ||||  | |||||||||||||||||| |||||||| || | |||||||||    
T  20289493 ccaaagctaaagacatctgatttctctgaaaacagtccttgcattgcgtattcgggagatatataaccactgcattt 20289417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 20303946 - 20303862
Alignment:
Q  8 aatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgtattctggagatatgtagcgactgcatttaa 92  Q
    ||||| ||||||||||| |||||  ||| ||| |||| || |||| ||||||||||||| ||||| || |||| |||||||||||    
T  20303946 aatacaccaaagctaaaaacatctgatttctctgaaaaaagtcctcgcattgcgtattcaggagacatatagccactgcatttaa 20303862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 19939377 - 19939299
Alignment:
Q  11 actccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgtattctggagatatgtagcgactgcatt 89  Q
    ||||||||||||||||||||| |||  || ||||  | |||||||||||| ||||||||||| || || | ||||||||    
T  19939377 actccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcatattctggagacatataaccactgcatt 19939299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 19970516 - 19970438
Alignment:
Q  11 actccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgtattctggagatatgtagcgactgcatt 89  Q
    ||||||||||||||||||||| |||  || ||||  | |||||||||||| ||||||||||| || || | ||||||||    
T  19970516 actccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcatattctggagacatataaccactgcatt 19970438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 16872151 - 16872390
Alignment:
Q  8 aatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgtattctggagatatgtagcgactgcatttaaaggtcaaatgt-cta 106  Q
    |||||||| ||||||||||||||| || |||  ||||||||| |||||||||||||||| ||||||||| || |||| ||||||||| ||||| ||  |     
T  16872151 aatactccgaagctaaagacatcatatagctaagaaacaatttcttgcattgcgtattcgggagatatgcagtgactacatttaaagctcaaacgtaatg 16872250  T
Q  107 tgctcttagtattttctactatatttgttggacaaagaggaag--gcatatacttgctatgttccaataattcttcttgtcttgccattcacttcactgt 204  Q
     |||||| |||| || ||| || ||| ||||  |||||| |||  |  ||||||| ||||||||||| ||||||| |  | |  || |||| ||||||||    
T  16872251 agctcttcgtatattttacaatcttt-ttggtgaaagagaaaggtgtgtatactttctatgttccaacaattcttgtcatatatcc-ttcatttcactgt 16872348  T
Q  205 ctccaaataatttagccgtaccaaaatctgatattttcggat 246  Q
    ||||||||| ||||||| | | |||| |||||||||||||||    
T  16872349 ctccaaatattttagccattcgaaaacctgatattttcggat 16872390  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 399
Target Start/End: Complemental strand, 16654312 - 16654243
Alignment:
Q  330 aatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagcattttttgtttatatggat 399  Q
    |||| ||||||||||||||||| ||||||||||| || || |||||||  ||| | ||||||| ||||||    
T  16654312 aatcttcgagcaattccttcaactatgttaaaacactattcccaatcttacatctgttgtttaaatggat 16654243  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 19348363 - 19348300
Alignment:
Q  318 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 381  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||    
T  19348363 tgaagatagagcaatccttgagcaattccttctattatgttaaaacgcttcttccaatctagca 19348300  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 19379429 - 19379366
Alignment:
Q  318 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 381  Q
    |||||||| ||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||    
T  19379429 tgaagatagagcaatccttgagcaattccttctattatgttgaaacgcttcttccaatctagca 19379366  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 19500631 - 19500694
Alignment:
Q  318 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 381  Q
    |||||||| ||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||    
T  19500631 tgaagatagagcaatccttgagcaattccttctattatgttgaaacgcttcttccaatctagca 19500694  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 19454426 - 19454361
Alignment:
Q  316 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 381  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||||    
T  19454426 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctagca 19454361  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 19551618 - 19551681
Alignment:
Q  316 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 379  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19551618 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19551681  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 19581070 - 19581007
Alignment:
Q  316 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 379  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19581070 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19581007  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 15943177 - 15943112
Alignment:
Q  316 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 381  Q
    ||||||||||||| |||||| |||| |||||||| |||||| |||| ||||| |||||||||||||    
T  15943177 tgtgaagatatagtaatccttgagcgattccttcgattatgctaaagcgcttattccaatctagca 15943112  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 19407406 - 19407341
Alignment:
Q  316 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 381  Q
    |||||||||| || |||||| ||| ||||||||| |||| ||| ||||||||||||||||||||||    
T  19407406 tgtgaagatagagtaatccttgagaaattccttctattacgttgaaacgctttttccaatctagca 19407341  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 19526650 - 19526711
Alignment:
Q  318 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 379  Q
    |||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19526650 tgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19526711  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 19415483 - 19415420
Alignment:
Q  318 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 381  Q
    |||||||| || |||||| ||| ||||||||| |||||||| |||||||| |||||||||||||    
T  19415483 tgaagatagagtaatccttgagaaattccttcgattatgttgaaacgcttcttccaatctagca 19415420  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 16006503 - 16006438
Alignment:
Q  316 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 381  Q
    ||||||| || || |||||| ||||||||||||| |||||| ||||||| || |||||||||||||    
T  16006503 tgtgaaggtaaagtaatccttgagcaattccttctattatgctaaaacgtttgttccaatctagca 16006438  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 19149273 - 19149318
Alignment:
Q  316 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaa 361  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  19149273 tgtgaagatatagtaatccttgagcaattccttctattatgttaaa 19149318  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 386
Target Start/End: Original strand, 15963795 - 15963865
Alignment:
Q  316 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagcattttt 386  Q
    ||||||| ||||| | |||| ||||||||||||| |||||| |||| || || |||||||||| |||||||    
T  15963795 tgtgaaggtatagtagtccttgagcaattccttcgattatgctaaagcgtttgttccaatctaacattttt 15963865  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 19187262 - 19187197
Alignment:
Q  316 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 381  Q
    ||||||| ||||| | |||| ||||||||||||| |||||| |||| || || |||||||||||||    
T  19187262 tgtgaaggtatagtagtccttgagcaattccttctattatgctaaagcgtttattccaatctagca 19187197  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 19399114 - 19399065
Alignment:
Q  330 aatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 379  Q
    |||||| ||| ||||||||| |||||||| |||||||| |||||||||||    
T  19399114 aatccttgagaaattccttctattatgttgaaacgcttcttccaatctag 19399065  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 225 - 378
Target Start/End: Original strand, 2707336 - 2707489
Alignment:
Q  225 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 324  Q
    |||||||| |||||||| |||||||   || |||| ||||| || ||||| | |||||  ||||||||||| || | ||||||  ||||||| |||||||    
T  2707336 ccaaaatcagatatttttggattcaattctccatccaacaagatattacttggctttaggtctctatgtattattcttaatcttgaatctctatgaagat 2707435  T
Q  325 atagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatcta 378  Q
    | ||||  |||||||  ||||||||||||||| | ||||| |||||||||||||    
T  2707436 aaagcagacctcgagagattccttcaattatggttaaacgttttttccaatcta 2707489  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 378
Target Start/End: Original strand, 2723728 - 2723881
Alignment:
Q  225 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 324  Q
    ||||| || |||||||| ||||||||  || |||| ||||| || ||||||| |||||  ||||||||||| || | ||||||  ||||||| |||||||    
T  2723728 ccaaagtcggatatttttggattcagttctccatccaacaaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagat 2723827  T
Q  325 atagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatcta 378  Q
    | |||| ||| ||||  ||||| ||||||||||  || || |||| ||||||||    
T  2723828 aaagcagtccgcgagagattccctcaattatgtataagcgtttttgccaatcta 2723881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 378
Target Start/End: Original strand, 2745567 - 2745711
Alignment:
Q  234 gatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatc 333  Q
    |||||||| ||||||||  || |||| ||||| || ||||||| |||||  ||||||||||| || | ||||||  ||||||| |||||||| |||| ||    
T  2745567 gatatttttggattcagttctccatccaacaaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagataaagcagtc 2745666  T
Q  334 ctcgagcaattccttcaattatgttaaaacgctttttccaatcta 378  Q
    | ||||  ||||| ||||||||||  || || |||| ||||||||    
T  2745667 cgcgagagattccctcaattatgtataagcgtttttgccaatcta 2745711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 378
Target Start/End: Original strand, 2717106 - 2717259
Alignment:
Q  225 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 324  Q
    ||||| || |||||||| ||||||||  || |||| ||||| || |||||||  ||||  |||||||| || || | ||||||  ||||||| |||||||    
T  2717106 ccaaagtcggatatttttggattcagttctccatccaacaaaatattactcggttttaggtctctatggattattcttaatctcgaatctctatgaagat 2717205  T
Q  325 atagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatcta 378  Q
    | |||| ||| ||||  ||||||||||||||||  || || |||| ||||||||    
T  2717206 aaagcagtccgcgagagattccttcaattatgtataagcgtttttgccaatcta 2717259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 2712642 - 2712714
Alignment:
Q  285 tctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgt 357  Q
    ||||||||||| || | ||||||  ||||||  |||||||| |||||||||||||  ||||| ||||||||||    
T  2712642 tctctatgtattattcttaatcttgaatctcgatgaagataaagcaatcctcgagagattccctcaattatgt 2712714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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